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1;;; GNU Guix --- Functional package management for GNU
2;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <[email protected]>
3;;; Copyright © 2017, 2019 Ricardo Wurmus <[email protected]>
4;;; Copyright © 2017 Nikita <[email protected]>
5;;; Copyright © 2017 Julien Lepiller <[email protected]>
6;;; Copyright © 2018, 2019, 2020 Efraim Flashner <[email protected]>
7;;; Copyright © 2020 Nicolas Goaziou <[email protected]>
8;;; Copyright © 2020 Marius Bakke <[email protected]>
9;;; Copyright © 2021 Brendan Tildesley <[email protected]>
10;;;
11;;; This file is part of GNU Guix.
12;;;
13;;; GNU Guix is free software; you can redistribute it and/or modify it
14;;; under the terms of the GNU General Public License as published by
15;;; the Free Software Foundation; either version 3 of the License, or (at
16;;; your option) any later version.
17;;;
18;;; GNU Guix is distributed in the hope that it will be useful, but
19;;; WITHOUT ANY WARRANTY; without even the implied warranty of
20;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
21;;; GNU General Public License for more details.
22;;;
23;;; You should have received a copy of the GNU General Public License
24;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
25
26(define-module (gnu packages python-compression)
27 #:use-module ((guix licenses) #:prefix license:)
28 #:use-module (guix utils)
29 #:use-module (guix packages)
30 #:use-module (guix download)
31 #:use-module (guix build-system gnu)
32 #:use-module (guix build-system python)
33 #:use-module (gnu packages)
34 #:use-module (gnu packages libffi)
35 #:use-module (gnu packages compression)
36 #:use-module (gnu packages check)
37 #:use-module (gnu packages maths)
38 #:use-module (gnu packages pkg-config)
39 #:use-module (gnu packages python)
40 #:use-module (gnu packages python-build)
41 #:use-module (gnu packages python-check)
42 #:use-module (gnu packages python-crypto)
43 #:use-module (gnu packages python-xyz)
44 #:use-module (gnu packages sphinx))
45
46(define-public python-multivolumefile
47 (package
48 (name "python-multivolumefile")
49 (version "0.2.2")
50 (source
51 (origin
52 (method url-fetch)
53 (uri (pypi-uri "multivolumefile" version))
54 (sha256
55 (base32
56 "0j46wab4b09s3favjzp3zs1cn2sn8pr7qyngs5wn31hpqqxbbz76"))))
57 (build-system python-build-system)
58 (native-inputs
59 `(("python-pep517" ,python-pep517)
60 ("python-setuptools" ,python-setuptools)
61 ("python-setuptools-scm" ,python-setuptools-scm/next)
62 ("python-coverage" ,python-coverage)
63 ("python-coveralls" ,python-coveralls)
64 ("python-pyannotate" ,python-pyannotate)
65 ("python-pytest" ,python-pytest)
66 ("python-pytest-cov" ,python-pytest-cov)))
67 (home-page "https://github.com/miurahr/multivolume")
68 (synopsis "Treat multiple files as one")
69 (description "MultiVolumefile is a Python library that provides a
70file-object abstraction, making it possible to use multiple files as if they
71were a single file.")
72 (license license:lgpl2.1+)))
73
74(define-public python-bcj-cffi
75 (package
76 (name "python-bcj-cffi")
77 (version "0.5.0")
78 (source
79 (origin
80 (method url-fetch)
81 (uri (pypi-uri "bcj-cffi" version))
82 (sha256
83 (base32
84 "1jcczrb8zgg6w7v76w1wpz3nw75fghk3xwxkn09ll7kck7sdf68d"))))
85 (build-system python-build-system)
86 (propagated-inputs
87 `(("python-cffi" ,python-cffi)
88 ("python-toml" ,python-toml)
89 ("python-setuptools-scm" ,python-setuptools-scm/next)))
90 (native-inputs
91 `(("python-setuptools" ,python-setuptools)
92 ("python-coverage" ,python-coverage)
93 ("python-pytest" ,python-pytest)
94 ("python-pytest-cov" ,python-pytest-cov)))
95 (home-page "https://github.com/miurahr/bcj-cffi")
96 (synopsis "Branch / Call /Jump CFFI library in Python")
97 (description "This package provides an implementation of the Branch / Call /
98Jump conversion filter by CFFI for Python.")
99 (license license:lgpl2.1+)))
100
101(define-public python-ppmd-cffi
102 (package
103 (name "python-ppmd-cffi")
104 (version "0.3.3")
105 (source
106 (origin
107 (method url-fetch)
108 (uri (pypi-uri "ppmd-cffi" version))
109 (sha256
110 (base32
111 "01wcd9l6pp6hivdmd275qh9dhcwficjqfl67hxix5n07vvq7jzz0"))))
112 (build-system python-build-system)
113 (propagated-inputs
114 `(("python-cffi" ,python-cffi)))
115 (native-inputs
116 `(("python-setuptools" ,python-setuptools)
117 ("python-setuptools-scm" ,python-setuptools-scm/next)
118 ("python-pep517" ,python-pep517)
119 ("python-coverage" ,python-coverage)
120 ("python-pytest" ,python-pytest)
121 ("python-pytest-cov" ,python-pytest-cov)))
122 (home-page "https://github.com/miurahr/ppmd")
123 (synopsis "Prediction by Partial Matching compression library")
124 (description "PPMd is a compression algorithm library using the Prediction
125by Partial Matching statistical technique. It is used in RAR and 7-Zip as one of
126several possible methods.")
127 (license license:lgpl2.1+)))
128
129(define-public python-py7zr
130 (package
131 (name "python-py7zr")
132 (version "0.14.1")
133 (source
134 (origin
135 (method url-fetch)
136 (uri (pypi-uri "py7zr" version))
137 (sha256
138 (base32
139 "1zmgp7yax328fj8yj8pj4l7yh78hp727j6wk12vfi6nmi82wl32i"))))
140 (build-system python-build-system)
141 (propagated-inputs
142 `(("python-bcj-cffi" ,python-bcj-cffi)
143 ("python-multivolumefile" ,python-multivolumefile)
144 ("python-ppmd-cffi" ,python-ppmd-cffi)
145 ("python-pycryptodome" ,python-pycryptodome)
146 ("python-pyzstd" ,python-pyzstd)
147 ("python-texttable" ,python-texttable)
148 ("python-zstandard" ,python-zstandard)))
149 (native-inputs
150 `(("python-setuptools" ,python-setuptools)
151 ("python-setuptools-scm" ,python-setuptools-scm/next)
152 ("python-coverage" ,python-coverage)
153 ("python-coveralls" ,python-coveralls)
154 ("python-libarchive-c" ,python-libarchive-c)
155 ("python-py-cpuinfo" ,python-py-cpuinfo)
156 ("python-pyannotate" ,python-pyannotate)
157 ("python-pytest" ,python-pytest)
158 ("python-pytest-benchmark" ,python-pytest-benchmark)
159 ("python-pytest-cov" ,python-pytest-cov)
160 ("python-pytest-remotedata" ,python-pytest-remotedata)
161 ("python-pytest-timeout" ,python-pytest-timeout)))
162 (home-page "https://github.com/miurahr/py7zr")
163 (synopsis "7-zip in Python")
164 (description "This package provides py7zr, which implements 7-zip
165archive compression, decompression, encryption and decryption in
166Python.")
167 (license license:lgpl2.1+)))
168
169(define-public python-lzo
170 (package
171 (name "python-lzo")
172 (version "1.12")
173 (source
174 (origin
175 (method url-fetch)
176 (uri (pypi-uri "python-lzo" version))
177 (sha256
178 (base32
179 "0iakqgd51n1cd7r3lpdylm2rgbmd16y74cra9kcapwg84mlf9a4p"))))
180 (build-system python-build-system)
181 (arguments
182 `(#:test-target "check"
183 #:phases
184 (modify-phases %standard-phases
185 (add-after 'unpack 'patch-setuppy
186 (lambda _
187 (substitute* "setup.py"
188 (("include_dirs.append\\(.*\\)")
189 (string-append "include_dirs.append('"
190 (assoc-ref %build-inputs "lzo")
191 "/include/lzo"
192 "')")))
193 #t)))))
194 (inputs
195 `(("lzo" ,lzo)))
196 (home-page "https://github.com/jd-boyd/python-lzo")
197 (synopsis "Python bindings for the LZO data compression library")
198 (description
199 "Python-LZO provides Python bindings for LZO, i.e. you can access
200the LZO library from your Python scripts thereby compressing ordinary
201Python strings.")
202 (license license:gpl2+)))
203
204(define-public python2-lzo
205 (package-with-python2 python-lzo))
206
207(define-public python-lz4
208 (package
209 (name "python-lz4")
210 (version "0.10.1")
211 (source
212 (origin
213 (method url-fetch)
214 (uri (pypi-uri "lz4" version))
215 (sha256
216 (base32
217 "0ghv1xbaq693kgww1x9c22bplz479ls9szjsaa4ig778ls834hm0"))
218 (modules '((guix build utils)))
219 (snippet
220 '(begin
221 ;; Remove bundled copy of lz4.
222 (delete-file-recursively "lz4libs")
223 #t))))
224 (build-system python-build-system)
225 (native-inputs
226 `(("pkg-config" ,pkg-config)
227 ("python-nose" ,python-nose)
228 ("python-setuptools-scm" ,python-setuptools-scm)))
229 (inputs
230 `(("lz4" ,lz4)))
231 (home-page "https://github.com/python-lz4/python-lz4")
232 (synopsis "LZ4 bindings for Python")
233 (description
234 "This package provides python bindings for the lz4 compression library
235by Yann Collet. The project contains bindings for the LZ4 block format and
236the LZ4 frame format.")
237 (license license:bsd-3)))
238
239(define-public python2-lz4
240 (package-with-python2 python-lz4))
241
242(define-public python-lzstring
243 (package
244 (name "python-lzstring")
245 (version "1.0.4")
246 (source
247 (origin
248 (method url-fetch)
249 (uri (pypi-uri "lzstring" version))
250 (sha256
251 (base32
252 "18ly9pppy2yspxzw7k1b23wk77k7m44rz2g0271bqgqrk3jn3yhs"))))
253 (build-system python-build-system)
254 (propagated-inputs
255 `(("python-future" ,python-future)))
256 (home-page "https://github.com/gkovacs/lz-string-python")
257 (synopsis "String compression")
258 (description "Lz-string is a string compressor library for Python.")
259 (license license:expat)))
260
261(define-public python2-lzstring
262 (package-with-python2 python-lzstring))
263
264(define-public python-brotli
265 (package
266 (name "python-brotli")
267 (version "1.0.9")
268 (source
269 (origin
270 (method url-fetch)
271 (uri (pypi-uri "Brotli" version ".zip"))
272 (sha256
273 (base32
274 "0f4433s4wv9masc303kkb1s0a09x81xwr8pdvj0kyxzdl05826sd"))))
275 (build-system python-build-system)
276 (native-inputs
277 `(("unzip" ,unzip)))
278 (home-page "https://github.com/google/brotli")
279 (synopsis "Python bindings for the Brotli compression library")
280 (description
281 "This package provides python bindings for the Brotli compression library.")
282 (license license:asl2.0)))
283
284(define-public bitshuffle
285 (package
286 (name "bitshuffle")
287 (version "0.3.5")
288 (source (origin
289 (method url-fetch)
290 (uri (pypi-uri "bitshuffle" version))
291 (sha256
292 (base32
293 "1823x61kyax4dc2hjmc1xraskxi1193y8lvxd03vqv029jrj8cjy"))
294 (modules '((guix build utils)))
295 (snippet
296 '(begin
297 ;; Remove generated Cython files.
298 (delete-file "bitshuffle/h5.c")
299 (delete-file "bitshuffle/ext.c")
300 #t))))
301 (build-system python-build-system)
302 (arguments
303 `(#:tests? #f ; fail: https://github.com/h5py/h5py/issues/769
304 #:phases
305 (modify-phases %standard-phases
306 (add-after 'unpack 'fix-neon-detection
307 ;; Neon is only for aarch64 ATM
308 ;; see: https://github.com/kiyo-masui/bitshuffle/pull/73
309 (lambda _
310 (substitute* "src/bitshuffle_core.c"
311 (("#define USEARMNEON")
312 "#ifdef __aarch64__\n#define USEARMNEON\n#endif"))
313 #t))
314 (add-after 'unpack 'dont-build-native
315 (lambda _
316 (substitute* "setup.py"
317 (("'-march=native', ") ""))
318 #t)))))
319 (inputs
320 `(("numpy" ,python-numpy)
321 ("h5py" ,python-h5py)
322 ("hdf5" ,hdf5)))
323 (native-inputs
324 `(("cython" ,python-cython)))
325 (home-page "https://github.com/kiyo-masui/bitshuffle")
326 (synopsis "Filter for improving compression of typed binary data")
327 (description "Bitshuffle is an algorithm that rearranges typed, binary data
328for improving compression, as well as a python/C package that implements this
329algorithm within the Numpy framework.")
330 (license license:expat)))
331
332(define-public bitshuffle-for-snappy
333 (package/inherit bitshuffle
334 (name "bitshuffle-for-snappy")
335 (build-system gnu-build-system)
336 (arguments
337 (substitute-keyword-arguments (package-arguments bitshuffle)
338 ((#:tests? _ #f) #f)
339 ((#:phases phases)
340 `(modify-phases %standard-phases
341 (replace 'configure
342 (lambda* (#:key outputs #:allow-other-keys)
343 (with-output-to-file "Makefile"
344 (lambda _
345 (format #t "\
346libbitshuffle.so: src/bitshuffle.o src/bitshuffle_core.o src/iochain.o lz4/lz4.o
347\tgcc -O3 -ffast-math -std=c99 -o $@ -shared -fPIC $^
348
349%.o: %.c
350\tgcc -O3 -ffast-math -std=c99 -fPIC -Isrc -Ilz4 -c $< -o $@
351
352PREFIX:=~a
353LIBDIR:=$(PREFIX)/lib
354INCLUDEDIR:=$(PREFIX)/include
355
356install: libbitshuffle.so
357\tinstall -dm755 $(LIBDIR)
358\tinstall -dm755 $(INCLUDEDIR)
359\tinstall -m755 libbitshuffle.so $(LIBDIR)
360\tinstall -m644 src/bitshuffle.h $(INCLUDEDIR)
361\tinstall -m644 src/bitshuffle_core.h $(INCLUDEDIR)
362\tinstall -m644 src/iochain.h $(INCLUDEDIR)
363\tinstall -m644 lz4/lz4.h $(INCLUDEDIR)
364" (assoc-ref outputs "out"))))
365 #t))))))
366 (inputs '())
367 (native-inputs '())))
368
369(define-public python-zipp
370 (package
371 (name "python-zipp")
372 (version "1.0.0")
373 (source
374 (origin
375 (method url-fetch)
376 (uri (pypi-uri "zipp" version))
377 (sha256
378 (base32
379 "0v3qayhqv7vyzydpydwcp51bqciw8p2ajddw68x5k8zppc0vx3yk"))))
380 (build-system python-build-system)
381 (propagated-inputs
382 `(("python-more-itertools" ,python-more-itertools)))
383 (native-inputs
384 `(("python-setuptools-scm" ,python-setuptools-scm)))
385 (home-page "https://github.com/jaraco/zipp")
386 (synopsis
387 "Backport of pathlib-compatible object wrapper for zip files")
388 (description
389 "This package provides a @code{pathlib}-compatible @code{Zipfile} object
390wrapper. It provides a backport of the @code{Path} object.")
391 (properties `((python2-variant . ,(delay python2-zipp))))
392 (license license:expat)))
393
394(define-public python2-zipp
395 (let ((base (package-with-python2 (strip-python2-variant python-zipp))))
396 (package/inherit
397 base
398 (native-inputs
399 `(("python-contextlib2" ,python2-contextlib2)
400 ("python-pathlib2" ,python2-pathlib2)
401 ("python-unittest2" ,python2-unittest2)
402 ,@(package-native-inputs base))))))
403
404;; This package is used to bootstrap pytest, via importlib-metadata.
405(define-public python2-zipp-bootstrap
406 (hidden-package
407 (package/inherit
408 python2-zipp
409 (name "python2-zipp-bootstrap")
410 (arguments
411 `(#:tests? #f
412 ,@(package-arguments python2-zipp)))
413 (native-inputs
414 `(("python-setuptools-scm" ,python2-setuptools-scm))))))
415
416(define-public python-zstandard
417 (package
418 (name "python-zstandard")
419 (version "0.15.2")
420 (source
421 (origin
422 (method url-fetch)
423 (uri (pypi-uri "zstandard" version))
424 (sha256
425 (base32 "0by9z7nxnkzhmza075q6q91rs8lnpf91129k8ppv7kymbwshipjj"))))
426 (build-system python-build-system)
427 (native-inputs
428 `(("python-hypothesis" ,python-hypothesis)))
429 (home-page "https://github.com/indygreg/python-zstandard")
430 (synopsis "Zstandard bindings for Python")
431 (description "This project provides Python bindings for interfacing with
432the Zstandard compression library. A C extension and CFFI interface are
433provided.")
434 (license license:bsd-3)))
435
436(define-public python-pyzstd
437 (package
438 (name "python-pyzstd")
439 (version "0.14.3")
440 (source
441 (origin
442 (method url-fetch)
443 (uri (pypi-uri "pyzstd" version))
444 (sha256
445 (base32
446 "1d3mngs45w2p490vrq5ymd2wz4lp15phmks1ilcx4k7amgibml3d"))))
447 (build-system python-build-system)
448 (home-page "https://github.com/animalize/pyzstd")
449 (synopsis "Zstandard bindings for Python")
450 (description "This package provides Python bindings to the Zstandard (zstd)
451compression library. The API is similar to Python's bz2/lzma/zlib module.")
452 (license license:bsd-3)))