| 1 | |
| 2 | |
| 3 | |
| 4 | |
| 5 | |
| 6 | |
| 7 | |
| 8 | |
| 9 | |
| 10 | |
| 11 | |
| 12 | |
| 13 | |
| 14 | |
| 15 | |
| 16 | |
| 17 | |
| 18 | |
| 19 | |
| 20 | |
| 21 | |
| 22 | |
| 23 | |
| 24 | |
| 25 | |
| 26 | |
| 27 | |
| 28 | |
| 29 | |
| 30 | |
| 31 | |
| 32 | |
| 33 | |
| 34 | |
| 35 | |
| 36 | |
| 37 | |
| 38 | |
| 39 | |
| 40 | |
| 41 |
|
| 42 | (define-module (gnu packages image-processing)
|
| 43 | #:use-module ((guix licenses) #:prefix license:)
|
| 44 | #:use-module (guix packages)
|
| 45 | #:use-module (guix gexp)
|
| 46 | #:use-module (guix utils)
|
| 47 | #:use-module (guix download)
|
| 48 | #:use-module (guix git-download)
|
| 49 | #:use-module (guix build-system qt)
|
| 50 | #:use-module (guix build-system cmake)
|
| 51 | #:use-module (guix build-system gnu)
|
| 52 | #:use-module (guix build-system python)
|
| 53 | #:use-module (gnu packages)
|
| 54 | #:use-module (gnu packages algebra)
|
| 55 | #:use-module (gnu packages bison)
|
| 56 | #:use-module (gnu packages boost)
|
| 57 | #:use-module (gnu packages check)
|
| 58 | #:use-module (gnu packages compression)
|
| 59 | #:use-module (gnu packages cpp)
|
| 60 | #:use-module (gnu packages curl)
|
| 61 | #:use-module (gnu packages docbook)
|
| 62 | #:use-module (gnu packages documentation)
|
| 63 | #:use-module (gnu packages flex)
|
| 64 | #:use-module (gnu packages fontutils)
|
| 65 | #:use-module (gnu packages game-development)
|
| 66 | #:use-module (gnu packages gcc)
|
| 67 | #:use-module (gnu packages gd)
|
| 68 | #:use-module (gnu packages geo)
|
| 69 | #:use-module (gnu packages ghostscript)
|
| 70 | #:use-module (gnu packages gimp)
|
| 71 | #:use-module (gnu packages gl)
|
| 72 | #:use-module (gnu packages glib)
|
| 73 | #:use-module (gnu packages gnome)
|
| 74 | #:use-module (gnu packages graphics)
|
| 75 | #:use-module (gnu packages graphviz)
|
| 76 | #:use-module (gnu packages gstreamer)
|
| 77 | #:use-module (gnu packages gtk)
|
| 78 | #:use-module (gnu packages icu4c)
|
| 79 | #:use-module (gnu packages image)
|
| 80 | #:use-module (gnu packages imagemagick)
|
| 81 | #:use-module (gnu packages linux)
|
| 82 | #:use-module (gnu packages maths)
|
| 83 | #:use-module (gnu packages mpi)
|
| 84 | #:use-module (gnu packages opencl)
|
| 85 | #:use-module (gnu packages pdf)
|
| 86 | #:use-module (gnu packages perl)
|
| 87 | #:use-module (gnu packages photo)
|
| 88 | #:use-module (gnu packages pkg-config)
|
| 89 | #:use-module (gnu packages pretty-print)
|
| 90 | #:use-module (gnu packages protobuf)
|
| 91 | #:use-module (gnu packages python)
|
| 92 | #:use-module (gnu packages python-check)
|
| 93 | #:use-module (gnu packages python-science)
|
| 94 | #:use-module (gnu packages python-xyz)
|
| 95 | #:use-module (gnu packages qt)
|
| 96 | #:use-module (gnu packages sdl)
|
| 97 | #:use-module (gnu packages serialization)
|
| 98 | #:use-module (gnu packages sphinx)
|
| 99 | #:use-module (gnu packages sqlite)
|
| 100 | #:use-module (gnu packages tbb)
|
| 101 | #:use-module (gnu packages textutils)
|
| 102 | #:use-module (gnu packages tls)
|
| 103 | #:use-module (gnu packages version-control)
|
| 104 | #:use-module (gnu packages video)
|
| 105 | #:use-module (gnu packages xiph)
|
| 106 | #:use-module (gnu packages xml)
|
| 107 | #:use-module (gnu packages xorg)
|
| 108 | #:use-module (ice-9 match)
|
| 109 | #:use-module (srfi srfi-1))
|
| 110 |
|
| 111 | |
| 112 | (define-public bart
|
| 113 | (package
|
| 114 | (name "bart")
|
| 115 | (version "0.8.00")
|
| 116 | (source
|
| 117 | (origin
|
| 118 | (method git-fetch)
|
| 119 | (uri (git-reference
|
| 120 | (url "https://github.com/mrirecon/bart")
|
| 121 | (commit "eacc67b95cf128487ecc48f0e6541ea4dca08818")))
|
| 122 | (file-name (git-file-name name version))
|
| 123 | (sha256
|
| 124 | (base32 "05lcf7c3g7ms5h82bw1mi4kzkdv5wpqi1zrfhqfkgbcpd3irj6aq"))))
|
| 125 | (build-system gnu-build-system)
|
| 126 | (arguments
|
| 127 | (list
|
| 128 | #:test-target "utest"
|
| 129 | #:make-flags #~(list
|
| 130 | (string-append "PREFIX=" #$output)
|
| 131 | "PARALLEL=1"
|
| 132 | "PARALLEL_NJOBS=1"
|
| 133 | "OPENBLAS=1"
|
| 134 | "SCALAPACK=1"
|
| 135 | (string-append "BLAS_BASE=" #$(this-package-input "openblas"))
|
| 136 | (string-append "FFTW_BASE=" #$(this-package-input "fftw")))
|
| 137 | #:parallel-build? #false |
| 138 | #:phases
|
| 139 | #~(modify-phases %standard-phases
|
| 140 | (delete 'configure)
|
| 141 | (add-after 'unpack 'patch-/bin/bash
|
| 142 | (lambda _
|
| 143 | (substitute* "tests/pics.mk"
|
| 144 | (("/bin/bash") (which "bash"))))))))
|
| 145 | (inputs
|
| 146 | (list fftw
|
| 147 | fftwf
|
| 148 | libpng
|
| 149 | openblas
|
| 150 | python
|
| 151 | scalapack))
|
| 152 | (native-inputs
|
| 153 | (list doxygen
|
| 154 | util-linux)) |
| 155 | (home-page "https://mrirecon.github.io/bart/")
|
| 156 | (synopsis "Toolbox for computational magnetic resonance imaging")
|
| 157 | (description "The Berkeley Advanced Reconstruction Toolbox (BART) is an
|
| 158 | image-reconstruction framework for Computational Magnetic Resonance Imaging.
|
| 159 | The tools in this software implement various reconstruction algorithms for
|
| 160 | Magnetic Resonance Imaging.")
|
| 161 | (license license:bsd-3)))
|
| 162 |
|
| 163 | (define-public dcmtk
|
| 164 | (package
|
| 165 | (name "dcmtk")
|
| 166 | (version "3.6.7")
|
| 167 | (source
|
| 168 | (origin
|
| 169 | (method url-fetch)
|
| 170 | (uri
|
| 171 | (string-append "ftp://dicom.offis.de/pub/dicom/offis/software/dcmtk/"
|
| 172 | "dcmtk" (string-join (string-split version #\.) "")
|
| 173 | "/dcmtk-" version ".tar.gz"))
|
| 174 | (sha256
|
| 175 | (base32 "02kix73qhndgb56cmi5327666i6imp7hi17wwqp26q4d7s72jn3w"))))
|
| 176 | (build-system cmake-build-system)
|
| 177 | (arguments
|
| 178 | |
| 179 | (list #:configure-flags #~(list "-DBUILD_SHARED_LIBS=ON")))
|
| 180 | (inputs
|
| 181 | (list icu4c
|
| 182 | libjpeg-turbo
|
| 183 | libpng
|
| 184 | libtiff
|
| 185 | libxml2
|
| 186 | openssl
|
| 187 | zlib))
|
| 188 | (native-inputs
|
| 189 | (list doxygen)) |
| 190 | (home-page "https://dcmtk.org")
|
| 191 | (synopsis "Libraries and programs implementing parts of the DICOM standard")
|
| 192 | (description "DCMTK is a collection of libraries and applications
|
| 193 | implementing large parts the DICOM standard. It includes software for
|
| 194 | examining, constructing and converting DICOM image files, handling offline
|
| 195 | media, sending and receiving images over a network connection, as well as
|
| 196 | demonstrative image storage and worklist servers.")
|
| 197 | (license (license:fsf-free
|
| 198 | "file://COPYRIGHT"
|
| 199 | "A union of the Apache 2.0 licence and various non-copyleft
|
| 200 | licences similar to the Modified BSD licence."))))
|
| 201 |
|
| 202 | (define-public mia
|
| 203 | (package
|
| 204 | (name "mia")
|
| 205 | (version "2.4.7")
|
| 206 | (source (origin
|
| 207 | (method url-fetch)
|
| 208 | (uri (string-append "mirror://sourceforge/mia/mia/"
|
| 209 | (version-major+minor version)
|
| 210 | "/mia-" version ".tar.xz"))
|
| 211 | (sha256
|
| 212 | (base32
|
| 213 | "0qpcd3n26q52dpyibm11f5l6cgscdr54p2jish39gc3p1f5h3ws1"))
|
| 214 | (patches (search-patches "mia-fix-boost-headers.patch"
|
| 215 | "mia-vtk9.patch"
|
| 216 | "mia-vtk92.patch"
|
| 217 | "mia-vtk-version.patch"))))
|
| 218 | (build-system cmake-build-system)
|
| 219 | (arguments
|
| 220 | `(#:configure-flags
|
| 221 | (list "-DMIA_CREATE_NIPYPE_INTERFACES=OFF"
|
| 222 | "-DCMAKE_CXX_FLAGS=-fpermissive")))
|
| 223 | (inputs
|
| 224 | (list boost
|
| 225 | dcmtk
|
| 226 | doxygen
|
| 227 | eigen
|
| 228 | fftw
|
| 229 | fftwf
|
| 230 | gsl
|
| 231 | gts
|
| 232 | hdf5
|
| 233 | itpp
|
| 234 | libjpeg-turbo
|
| 235 | libpng
|
| 236 | libtiff
|
| 237 | libxml2
|
| 238 | libxml++
|
| 239 | maxflow
|
| 240 | niftilib
|
| 241 | nlopt
|
| 242 | openexr-2
|
| 243 | python-lxml
|
| 244 | vtk))
|
| 245 | (native-inputs
|
| 246 | (list pkg-config
|
| 247 | python-wrapper))
|
| 248 | (home-page "https://mia.sourceforge.net")
|
| 249 | (synopsis "Toolkit for gray scale medical image analysis")
|
| 250 | (description "MIA provides a combination of command line tools, plug-ins,
|
| 251 | and libraries that make it possible run image processing tasks interactively
|
| 252 | in a command shell and to prototype using the shell's scripting language. It
|
| 253 | is built around a plug-in structure that makes it easy to add functionality
|
| 254 | without compromising the original code base and it makes use of a wide variety
|
| 255 | of external libraries that provide additional functionality.")
|
| 256 | (license license:gpl3+)))
|
| 257 |
|
| 258 | (define-public opencolorio
|
| 259 | (package
|
| 260 | (name "opencolorio")
|
| 261 | (version "1.1.1")
|
| 262 | (source
|
| 263 | (origin
|
| 264 | (method git-fetch)
|
| 265 | (uri (git-reference
|
| 266 | (url "https://github.com/AcademySoftwareFoundation/OpenColorIO")
|
| 267 | (commit (string-append "v" version))))
|
| 268 | (patches (search-patches "opencolorio-fix-build-with-gcc11.patch"))
|
| 269 | (sha256
|
| 270 | (base32 "12srvxca51czpfjl0gabpidj9n84mw78ivxy5w75qhq2mmc798sb"))
|
| 271 | (file-name (git-file-name name version))
|
| 272 | (modules '((guix build utils)))
|
| 273 | (snippet
|
| 274 | `(begin
|
| 275 | |
| 276 | |
| 277 | |
| 278 | |
| 279 | (for-each delete-file-recursively
|
| 280 | (filter
|
| 281 | (lambda (full-name)
|
| 282 | (let ((file (basename full-name)))
|
| 283 | (not (or (string-prefix? "yaml-cpp-0.3" file)
|
| 284 | (string=? "unittest.h" file)))))
|
| 285 | (find-files "ext" ".*")))
|
| 286 |
|
| 287 | #t))))
|
| 288 | (build-system cmake-build-system)
|
| 289 | (arguments
|
| 290 | `(#:configure-flags
|
| 291 | (list (string-append "-DCMAKE_CXX_FLAGS="
|
| 292 | "-Wno-error=deprecated-declarations "
|
| 293 | "-Wno-error=unused-function")
|
| 294 | "-DOCIO_BUILD_STATIC=OFF"
|
| 295 | |
| 296 | "-DUSE_EXTERNAL_TINYXML=ON"
|
| 297 | "-DUSE_EXTERNAL_LCMS=ON")
|
| 298 | #:phases
|
| 299 | (modify-phases %standard-phases
|
| 300 | (add-after 'unpack 'patch-test-suite
|
| 301 | (lambda _
|
| 302 | (substitute* "src/core_tests/CMakeLists.txt"
|
| 303 | (("/bin/sh") (which "bash")))
|
| 304 | #t)))))
|
| 305 | (native-inputs
|
| 306 | (list git pkg-config))
|
| 307 | (inputs
|
| 308 | |
| 309 | |
| 310 | |
| 311 | (list lcms openexr-2 tinyxml))
|
| 312 | (home-page "https://opencolorio.org")
|
| 313 | (synopsis "Color management for visual effects and animation")
|
| 314 | (description
|
| 315 | "OpenColorIO, or OCIO, is a complete color management solution geared
|
| 316 | towards motion picture production, with an emphasis on visual effects and
|
| 317 | computer animation. It provides a straightforward and consistent user
|
| 318 | experience across all supporting applications while allowing for sophisticated
|
| 319 | back-end configuration options suitable for high-end production usage.
|
| 320 |
|
| 321 | OCIO is compatible with the @acronym{ACES, Academy Color Encoding
|
| 322 | Specification} and is @acronym{LUT, look-up table}-format agnostic, supporting
|
| 323 | many popular formats.")
|
| 324 | (license (list license:expat |
| 325 | license:zlib |
| 326 | license:bsd-3)))) |
| 327 |
|
| 328 | (define-public vtk
|
| 329 | (package
|
| 330 | (name "vtk")
|
| 331 | (version "9.2.2")
|
| 332 | (source (origin
|
| 333 | (method url-fetch)
|
| 334 | (uri (string-append "https://vtk.org/files/release/"
|
| 335 | (version-major+minor version)
|
| 336 | "/VTK-" version ".tar.gz"))
|
| 337 | (sha256
|
| 338 | (base32
|
| 339 | "0x8h2bwxq2870067j7wqd0qym87pa3inkbri93zrdb0zwwmhlnqw"))
|
| 340 | (modules '((guix build utils)))
|
| 341 | (snippet
|
| 342 | '(begin
|
| 343 | (for-each
|
| 344 | (lambda (dir)
|
| 345 | (delete-file-recursively
|
| 346 | (string-append "ThirdParty/" dir "/vtk" dir)))
|
| 347 | |
| 348 | '("doubleconversion" "eigen" "expat" "freetype" "gl2ps"
|
| 349 | "glew" "hdf5" "jpeg" "jsoncpp" "libharu" "libproj"
|
| 350 | "libxml2" "lz4" "netcdf" "ogg" "png" "sqlite" "theora"
|
| 351 | "tiff" "zlib"))
|
| 352 | (substitute* "IO/ExportPDF/vtkPDFContextDevice2D.cxx"
|
| 353 | (("\\bHPDF_UINT16 (noPen|dash|dot|denseDot|dashDot|dashDotDot)\\b"
|
| 354 | _ var)
|
| 355 | (string-append "HPDF_REAL " var)))))))
|
| 356 | (properties `((release-monitoring-url . "https://vtk.org/download/")))
|
| 357 | (build-system cmake-build-system)
|
| 358 | (arguments
|
| 359 | (list #:build-type "Release" |
| 360 | #:configure-flags
|
| 361 | #~'( |
| 362 | "-DVTK_USE_EXTERNAL=OFF" |
| 363 | "-DVTK_MODULE_USE_EXTERNAL_VTK_doubleconversion=ON"
|
| 364 | "-DVTK_MODULE_USE_EXTERNAL_VTK_eigen=ON"
|
| 365 | "-DVTK_MODULE_USE_EXTERNAL_VTK_expat=ON"
|
| 366 | "-DVTK_MODULE_USE_EXTERNAL_VTK_freetype=ON"
|
| 367 | "-DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=ON"
|
| 368 | "-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON"
|
| 369 | "-DVTK_MODULE_USE_EXTERNAL_VTK_hdf5=ON"
|
| 370 | "-DVTK_MODULE_USE_EXTERNAL_VTK_jpeg=ON"
|
| 371 | "-DVTK_MODULE_USE_EXTERNAL_VTK_jsoncpp=ON"
|
| 372 | "-DVTK_MODULE_USE_EXTERNAL_VTK_libharu=ON"
|
| 373 | "-DVTK_MODULE_USE_EXTERNAL_VTK_libproj=ON"
|
| 374 | "-DVTK_MODULE_USE_EXTERNAL_VTK_libxml2=ON"
|
| 375 | "-DVTK_MODULE_USE_EXTERNAL_VTK_lz4=ON"
|
| 376 | "-DVTK_MODULE_USE_EXTERNAL_VTK_netcdf=ON"
|
| 377 | "-DVTK_MODULE_USE_EXTERNAL_VTK_ogg=ON"
|
| 378 | "-DVTK_MODULE_USE_EXTERNAL_VTK_png=ON"
|
| 379 | |
| 380 | "-DVTK_MODULE_USE_EXTERNAL_VTK_sqlite=ON"
|
| 381 | "-DVTK_MODULE_USE_EXTERNAL_VTK_theora=ON"
|
| 382 | "-DVTK_MODULE_USE_EXTERNAL_VTK_tiff=ON"
|
| 383 | "-DVTK_MODULE_USE_EXTERNAL_VTK_zlib=ON"
|
| 384 | "-DVTK_MODULE_ENABLE_VTK_RenderingExternal=YES" |
| 385 | "-DVTK_WRAP_PYTHON=ON"
|
| 386 | "-DVTK_PYTHON_VERSION:STRING=3"
|
| 387 |
|
| 388 | "-DVTK_SMP_ENABLE_OPENNMP=ON"
|
| 389 | "-DVTK_SMP_ENABLE_TBB=ON"
|
| 390 | "-DVTK_USE_MPI=ON"
|
| 391 | #$@(if (target-riscv64?)
|
| 392 | '("-DCMAKE_SHARED_LINKER_FLAGS=-latomic"
|
| 393 | "-DCMAKE_EXE_LINKER_FLAGS=-latomic")
|
| 394 | '()))
|
| 395 |
|
| 396 | #:phases
|
| 397 | #~(modify-phases %standard-phases
|
| 398 | (add-after 'unpack 'clear-reference-to-compiler
|
| 399 | (lambda _
|
| 400 | (define (choose . files)
|
| 401 | (let loop ((files files))
|
| 402 | (if (null? files)
|
| 403 | #f
|
| 404 | (if (file-exists? (car files))
|
| 405 | (car files)
|
| 406 | (loop (cdr files))))))
|
| 407 |
|
| 408 | |
| 409 | (substitute* (choose
|
| 410 | "Common/Core/vtkConfigureDeprecated.h.in" |
| 411 | "Common/Core/vtkConfigure.h.in") |
| 412 | (("@CMAKE_CXX_COMPILER@") "c++")))))
|
| 413 |
|
| 414 | #:tests? #f)) |
| 415 | (inputs
|
| 416 | (list double-conversion
|
| 417 | eigen
|
| 418 | expat
|
| 419 | freetype
|
| 420 | gl2ps
|
| 421 | glew
|
| 422 | glu
|
| 423 | hdf5
|
| 424 | libharu
|
| 425 | libjpeg-turbo
|
| 426 | jsoncpp
|
| 427 | libtheora
|
| 428 | libx11
|
| 429 | libxml2
|
| 430 | libxt
|
| 431 | lz4
|
| 432 | mesa
|
| 433 | netcdf
|
| 434 | libpng
|
| 435 | libtiff
|
| 436 | openmpi
|
| 437 | proj
|
| 438 | python
|
| 439 | |
| 440 | sqlite
|
| 441 | xorgproto
|
| 442 | zlib))
|
| 443 | (propagated-inputs
|
| 444 | |
| 445 | |
| 446 | |
| 447 | (list libogg
|
| 448 | tbb))
|
| 449 | (home-page "https://vtk.org/")
|
| 450 | (synopsis "Libraries for 3D computer graphics")
|
| 451 | (description
|
| 452 | "The Visualization Toolkit (VTK) is a C++ library for 3D computer graphics,
|
| 453 | image processing and visualization. It supports a wide variety of
|
| 454 | visualization algorithms including: scalar, vector, tensor, texture, and
|
| 455 | volumetric methods; and advanced modeling techniques such as: implicit
|
| 456 | modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay
|
| 457 | triangulation. VTK has an extensive information visualization framework, has
|
| 458 | a suite of 3D interaction widgets, supports parallel processing, and
|
| 459 | integrates with various databases on GUI toolkits such as Qt and Tk.")
|
| 460 | (license license:bsd-3)))
|
| 461 |
|
| 462 | (define-public vtk-7
|
| 463 | (package
|
| 464 | (inherit vtk)
|
| 465 | (version "7.1.1")
|
| 466 | (source (origin
|
| 467 | (method url-fetch)
|
| 468 | (uri (string-append "https://vtk.org/files/release/"
|
| 469 | (version-major+minor version)
|
| 470 | "/VTK-" version ".tar.gz"))
|
| 471 | (sha256
|
| 472 | (base32
|
| 473 | "0nm7xwwj7rnsxjdv2ssviys8nhci4n9iiiqm2y14s520hl2dsp1d"))
|
| 474 | (patches (search-patches "vtk-7-python-compat.patch"
|
| 475 | "vtk-7-hdf5-compat.patch"
|
| 476 | "vtk-7-gcc-10-compat.patch"
|
| 477 | "vtk-7-gcc-11-compat.patch"))))
|
| 478 | (arguments
|
| 479 | (substitute-keyword-arguments (package-arguments vtk)
|
| 480 | ((#:configure-flags flags)
|
| 481 | |
| 482 | |
| 483 | #~(cons "-DCMAKE_CXX_FLAGS=-fpermissive" #$flags))
|
| 484 | ((#:phases phases)
|
| 485 | #~(modify-phases #$phases
|
| 486 | (add-after 'unpack 'remove-kernel-version
|
| 487 | |
| 488 | (lambda _
|
| 489 | (substitute*
|
| 490 | "ThirdParty/hdf5/vtkhdf5/config/cmake/libhdf5.settings.cmake.in"
|
| 491 | (("Host system: \\@CMAKE_HOST_SYSTEM\\@")
|
| 492 | "Host system: @CMAKE_SYSTEM_NAME@"))))))))))
|
| 493 |
|
| 494 | (define-public opencv
|
| 495 | (package
|
| 496 | (name "opencv")
|
| 497 | (version "4.8.0")
|
| 498 | (source (origin
|
| 499 | (method git-fetch)
|
| 500 | (uri (git-reference
|
| 501 | (url "https://github.com/opencv/opencv")
|
| 502 | (commit version)))
|
| 503 | (file-name (git-file-name name version))
|
| 504 | (modules '((guix build utils)))
|
| 505 | (snippet
|
| 506 | '(begin
|
| 507 | |
| 508 | |
| 509 | (with-directory-excursion "3rdparty"
|
| 510 | (for-each delete-file-recursively
|
| 511 | '("carotene"
|
| 512 | "cpufeatures"
|
| 513 | "flatbuffers"
|
| 514 | "ffmpeg"
|
| 515 | "include"
|
| 516 | "ippicv"
|
| 517 | "ittnotify"
|
| 518 | "libjasper"
|
| 519 | "libjpeg"
|
| 520 | "libjpeg-turbo"
|
| 521 | "libpng"
|
| 522 | "libtengine"
|
| 523 | "libtiff"
|
| 524 | "libwebp"
|
| 525 | "openexr"
|
| 526 | "openjpeg"
|
| 527 | "openvx"
|
| 528 | "protobuf"
|
| 529 | |
| 530 | "tbb"
|
| 531 | "zlib")))
|
| 532 |
|
| 533 | |
| 534 | (for-each delete-file (find-files "." "\\.jar$"))))
|
| 535 | (sha256
|
| 536 | (base32
|
| 537 | "14bjpb0ahhaqnim8g6vs0gyd6jgnmly1amx25a0rk1a6ii2aiywn"))))
|
| 538 | (build-system cmake-build-system)
|
| 539 | (arguments
|
| 540 | `(#:configure-flags
|
| 541 | (list "-DWITH_ADE=OFF" |
| 542 | "-DWITH_IPP=OFF"
|
| 543 | "-DWITH_ITT=OFF"
|
| 544 | "-DWITH_CAROTENE=OFF" |
| 545 | "-DENABLE_PRECOMPILED_HEADERS=OFF"
|
| 546 | "-DOPENCV_GENERATE_PKGCONFIG=ON"
|
| 547 |
|
| 548 | |
| 549 | |
| 550 | |
| 551 | |
| 552 | |
| 553 | |
| 554 | "-DCPU_BASELINE=SSE2"
|
| 555 |
|
| 556 | |
| 557 | "-DBUILD_opencv_python3=ON"
|
| 558 |
|
| 559 | ,@(match (%current-system)
|
| 560 | ("x86_64-linux"
|
| 561 | '("-DCPU_DISPATCH=NEON;VFPV3;FP16;SSE;SSE2;SSE3;SSSE3;SSE4_1;SSE4_2;POPCNT;AVX;FP16;AVX2;FMA3;AVX_512F;AVX512_SKX"
|
| 562 | "-DCPU_DISPATCH_REQUIRE=SSE3,SSSE3,SSE4_1,SSE4_2,AVX,AVX2"))
|
| 563 | ("armhf-linux"
|
| 564 | '("-DCPU_BASELINE_DISABLE=NEON")) |
| 565 | ("aarch64-linux"
|
| 566 | '("-DCPU_BASELINE=NEON"
|
| 567 | "-DCPU_DISPATCH=NEON;VFPV3;FP16"))
|
| 568 | (_ '()))
|
| 569 |
|
| 570 | "-DBUILD_PERF_TESTS=OFF"
|
| 571 | "-DBUILD_TESTS=ON"
|
| 572 |
|
| 573 | (string-append "-DOPENCV_EXTRA_MODULES_PATH=" (getcwd)
|
| 574 | "/opencv-contrib/modules")
|
| 575 |
|
| 576 | |
| 577 | (string-append "-DOPENCV_TEST_DATA_PATH=" (getcwd)
|
| 578 | "/opencv-extra/testdata")
|
| 579 |
|
| 580 | |
| 581 | |
| 582 | "-DBUILD_PROTOBUF=OFF"
|
| 583 |
|
| 584 | |
| 585 | |
| 586 | |
| 587 | |
| 588 | "-DWITH_FLATBUFFERS=OFF"
|
| 589 |
|
| 590 | |
| 591 | |
| 592 | |
| 593 | "-DPROTOBUF_UPDATE_FILES=ON"
|
| 594 |
|
| 595 | |
| 596 | |
| 597 | |
| 598 | |
| 599 | |
| 600 | "-DBUILD_opencv_xfeatures2d=OFF")
|
| 601 | #:phases
|
| 602 | (modify-phases %standard-phases
|
| 603 | (add-after 'unpack 'disable-broken-tests
|
| 604 | (lambda _
|
| 605 | |
| 606 | |
| 607 | (substitute* "../opencv-contrib/modules/face/test/test_face_align.cpp"
|
| 608 | (("\\bcan_detect_landmarks\\b" all)
|
| 609 | (string-append "DISABLED_" all)))
|
| 610 |
|
| 611 | |
| 612 | |
| 613 | (substitute* "modules/imgcodecs/test/test_exr.impl.hpp"
|
| 614 | (("\\breadWrite_32FC1\\b" all)
|
| 615 | (string-append "DISABLED_" all)))
|
| 616 |
|
| 617 | |
| 618 | |
| 619 | (substitute* "modules/dnn/test/test_layers.cpp"
|
| 620 | (("\\b(Accum|DataAugmentation|Resample|Correlation|Interp)\\b" all)
|
| 621 | (string-append "DISABLED_" all)))
|
| 622 |
|
| 623 | |
| 624 | |
| 625 | (substitute* "modules/photo/test/test_hdr.cpp"
|
| 626 | (("0\\.1\\)") "0.222)"))
|
| 627 |
|
| 628 | ,@(if (target-aarch64?)
|
| 629 | `( |
| 630 | |
| 631 | (substitute* "modules/photo/test/test_hdr.cpp"
|
| 632 | (("0\\.131") "0.222"))
|
| 633 | |
| 634 | (delete-file-recursively "modules/videoio/test/"))
|
| 635 | '())
|
| 636 |
|
| 637 | ,@(if (target-riscv64?)
|
| 638 | `( |
| 639 | |
| 640 | (substitute* "modules/photo/test/test_hdr.cpp"
|
| 641 | (("0\\.1") "0.240"))
|
| 642 | |
| 643 | |
| 644 | |
| 645 | |
| 646 | |
| 647 | (substitute* "../opencv-contrib/modules/ximgproc/test/test_fld.cpp"
|
| 648 | (("\\bManySmallCircles\\b" all)
|
| 649 | (string-append "DISABLED_" all))))
|
| 650 | '())))
|
| 651 | (add-after 'unpack 'unpack-submodule-sources
|
| 652 | (lambda* (#:key inputs #:allow-other-keys)
|
| 653 | (mkdir "../opencv-extra")
|
| 654 | (mkdir "../opencv-contrib")
|
| 655 | (copy-recursively (assoc-ref inputs "opencv-extra")
|
| 656 | "../opencv-extra")
|
| 657 | (copy-recursively (assoc-ref inputs "opencv-contrib")
|
| 658 | "../opencv-contrib")))
|
| 659 | (add-after 'build 'do-not-install-3rdparty-file
|
| 660 | (lambda _
|
| 661 | (substitute* "cmake_install.cmake"
|
| 662 | (("file\\(INSTALL .*3rdparty/include/opencl/LICENSE.txt.*")
|
| 663 | ""))))
|
| 664 | (add-before 'check 'start-xserver
|
| 665 | (lambda* (#:key inputs #:allow-other-keys)
|
| 666 | (let ((xorg-server (assoc-ref inputs "xorg-server"))
|
| 667 | (disp ":1"))
|
| 668 | (setenv "HOME" (getcwd))
|
| 669 | (setenv "DISPLAY" disp)
|
| 670 | |
| 671 | |
| 672 | (zero? (system (format #f "~a/bin/Xvfb ~a &" xorg-server disp)))))))))
|
| 673 | (native-inputs
|
| 674 | `(("pkg-config" ,pkg-config)
|
| 675 | ("xorg-server" ,xorg-server-for-tests) |
| 676 | ("opencv-extra"
|
| 677 | ,(origin
|
| 678 | (method git-fetch)
|
| 679 | (uri (git-reference
|
| 680 | (url "https://github.com/opencv/opencv_extra")
|
| 681 | (commit version)))
|
| 682 | (file-name (git-file-name "opencv_extra" version))
|
| 683 | (sha256
|
| 684 | (base32
|
| 685 | "11y9b35j74gg4gqll4v366qmhvjkcqml45khiajd8zsk1fraf70l"))))
|
| 686 | ("opencv-contrib"
|
| 687 | ,(origin
|
| 688 | (method git-fetch)
|
| 689 | (uri (git-reference (url "https://github.com/opencv/opencv_contrib")
|
| 690 | (commit version)))
|
| 691 | (file-name (git-file-name "opencv_contrib" version))
|
| 692 | (sha256
|
| 693 | (base32
|
| 694 | "16crcca9r4y4rby0dqdhc06qi84hjk6qxy2sql2dhh35hfs856rr"))))))
|
| 695 | (inputs
|
| 696 | (list eigen
|
| 697 | ffmpeg-4
|
| 698 | |
| 699 | gtk+
|
| 700 | gtkglext
|
| 701 | hdf5
|
| 702 | ilmbase
|
| 703 | imath |
| 704 | jasper
|
| 705 | libgphoto2
|
| 706 | libjpeg-turbo
|
| 707 | libpng
|
| 708 | libtiff
|
| 709 | libwebp
|
| 710 | openblas
|
| 711 | opencl-headers
|
| 712 | openexr
|
| 713 | openmpi
|
| 714 | openjpeg
|
| 715 | protobuf
|
| 716 | python
|
| 717 | python-numpy
|
| 718 | vtk
|
| 719 | zlib))
|
| 720 | |
| 721 | |
| 722 | (properties '((lint-hidden-cve . ("CVE-2018-7712"
|
| 723 | "CVE-2018-7713"
|
| 724 | "CVE-2018-7714"))))
|
| 725 | (synopsis "Computer vision library")
|
| 726 | (description "OpenCV is a library aimed at real-time computer vision,
|
| 727 | including several hundred computer vision algorithms. It can be used to do
|
| 728 | things like:
|
| 729 |
|
| 730 | @itemize
|
| 731 | @item image and video input and output
|
| 732 | @item image and video processing
|
| 733 | @item displaying
|
| 734 | @item feature recognition
|
| 735 | @item segmentation
|
| 736 | @item facial recognition
|
| 737 | @item stereo vision
|
| 738 | @item structure from motion
|
| 739 | @item augmented reality
|
| 740 | @item machine learning
|
| 741 | @end itemize\n
|
| 742 |
|
| 743 | This package includes the Python bindings for OpenCV, which are also known as
|
| 744 | the OpenCV-Python library.")
|
| 745 | (home-page "https://opencv.org/")
|
| 746 | (license license:bsd-3)))
|
| 747 |
|
| 748 | (define-public vips
|
| 749 | (package
|
| 750 | (name "vips")
|
| 751 | (version "8.13.1")
|
| 752 | (source
|
| 753 | (origin
|
| 754 | (method url-fetch)
|
| 755 | (uri (string-append
|
| 756 | "https://github.com/libvips/libvips/releases/download/v"
|
| 757 | version "/vips-" version ".tar.gz"))
|
| 758 | (sha256
|
| 759 | (base32 "00kp3439jcqv9l2gcjg88xzvlq8clv54z1m3x66i3chvarz7ndxd"))))
|
| 760 | (build-system gnu-build-system)
|
| 761 | (native-inputs
|
| 762 | (list gobject-introspection pkg-config))
|
| 763 | (inputs
|
| 764 | (list expat
|
| 765 | fftw
|
| 766 | giflib
|
| 767 | glib
|
| 768 | hdf5
|
| 769 | imagemagick
|
| 770 | lcms
|
| 771 | libexif
|
| 772 | libgsf
|
| 773 | libjpeg-turbo
|
| 774 | libpng
|
| 775 | (librsvg-for-system)
|
| 776 | libtiff
|
| 777 | libxml2
|
| 778 | libwebp
|
| 779 | matio
|
| 780 | niftilib
|
| 781 | openexr-2
|
| 782 | orc
|
| 783 | pango
|
| 784 | poppler))
|
| 785 | (home-page "https://libvips.github.io/libvips/")
|
| 786 | (synopsis "Multithreaded image processing system with low memory needs")
|
| 787 | (description
|
| 788 | "VIPS is a demand-driven, horizontally threaded image processing library.
|
| 789 | It's particularly good at processing large images, working with colour,
|
| 790 | scientific analysis, and general research & development.
|
| 791 |
|
| 792 | Compared to most image processing libraries VIPS needs little RAM and runs
|
| 793 | quickly, especially on machines with more than one CPU core. This is primarily
|
| 794 | due to its architecture which automatically parallelises the image workflows.")
|
| 795 | (license license:lgpl2.1+)))
|
| 796 |
|
| 797 | (define-public gmic
|
| 798 | (package
|
| 799 | (name "gmic")
|
| 800 | (version "3.0.0")
|
| 801 | (source
|
| 802 | (origin
|
| 803 | (method url-fetch)
|
| 804 | (uri (string-append "https://gmic.eu/files/source/gmic_"
|
| 805 | version ".tar.gz"))
|
| 806 | (sha256
|
| 807 | (base32 "080inz0wisv3rhvbnzrgcs3j25wq86gybp68yi56gw6vwswnn19z"))))
|
| 808 | (build-system cmake-build-system)
|
| 809 | (arguments
|
| 810 | `(#:tests? #f |
| 811 | #:configure-flags '("-DBUILD_LIB_STATIC=OFF"
|
| 812 | "-DENABLE_DYNAMIC_LINKING=ON"
|
| 813 | "-DENABLE_LTO=ON")
|
| 814 | #:phases
|
| 815 | (modify-phases %standard-phases
|
| 816 | (add-before 'configure 'set-LDFLAGS
|
| 817 | (lambda* (#:key inputs outputs #:allow-other-keys)
|
| 818 | (setenv "LDFLAGS"
|
| 819 | (string-append
|
| 820 | "-Wl,-rpath="
|
| 821 | (assoc-ref outputs "out") "/lib")))))))
|
| 822 | (native-inputs
|
| 823 | (list pkg-config))
|
| 824 | (inputs
|
| 825 | (list curl
|
| 826 | fftw
|
| 827 | graphicsmagick
|
| 828 | imath
|
| 829 | libjpeg-turbo
|
| 830 | libpng
|
| 831 | libtiff
|
| 832 | libx11
|
| 833 | |
| 834 | openexr
|
| 835 | zlib))
|
| 836 | (home-page "https://gmic.eu/")
|
| 837 | (synopsis "Full-featured framework for digital image processing")
|
| 838 | (description "G'MIC is a full-featured framework for digital image
|
| 839 | processing. It provides several user interfaces to convert / manipulate
|
| 840 | / filter / visualize generic image datasets, ranging from 1D scalar
|
| 841 | signals to 3D+t sequences of multi-spectral volumetric images, hence
|
| 842 | including 2D color images.")
|
| 843 | |
| 844 | (license (list license:cecill license:cecill-c))))
|
| 845 |
|
| 846 | (define-public gmic-qt
|
| 847 | (package
|
| 848 | (inherit gmic)
|
| 849 | (name "gmic-qt")
|
| 850 | (arguments
|
| 851 | (substitute-keyword-arguments (package-arguments gmic)
|
| 852 | ((#:configure-flags _)
|
| 853 | `(list "-DGMIC_QT_HOST=none" "-DENABLE_DYNAMIC_LINKING=ON"
|
| 854 | (string-append "-DGMIC_LIB_PATH="
|
| 855 | (assoc-ref %build-inputs "gmic") "/lib")))
|
| 856 | ((#:phases phases)
|
| 857 | `(modify-phases ,phases
|
| 858 | (add-after 'unpack 'qt-chdir
|
| 859 | (lambda _ (chdir "gmic-qt") #t))))))
|
| 860 | (native-inputs
|
| 861 | (list pkg-config qttools-5))
|
| 862 | (inputs
|
| 863 | (modify-inputs (package-inputs gmic)
|
| 864 | (prepend gmic qtbase-5)))
|
| 865 | (synopsis "Qt frontend for the G'MIC image processing framework")
|
| 866 | (license license:gpl3+)))
|
| 867 |
|
| 868 | (define-public gmic-qt-krita
|
| 869 | (package
|
| 870 | (inherit gmic-qt)
|
| 871 | (name "gmic-qt-krita")
|
| 872 | (arguments
|
| 873 | (substitute-keyword-arguments (package-arguments gmic-qt)
|
| 874 | ((#:configure-flags flags)
|
| 875 | '(list "-DGMIC_QT_HOST=krita" "-DENABLE_DYNAMIC_LINKING=ON"
|
| 876 | (string-append "-DGMIC_LIB_PATH="
|
| 877 | (assoc-ref %build-inputs "gmic") "/lib")))))
|
| 878 | (synopsis "Krita plugin for the G'MIC image processing framework")))
|
| 879 |
|
| 880 | (define-public gmic-qt-gimp
|
| 881 | (package
|
| 882 | (inherit gmic-qt)
|
| 883 | (name "gmic-qt-gimp")
|
| 884 | (inputs
|
| 885 | |
| 886 | (modify-inputs (package-inputs gmic-qt)
|
| 887 | (prepend gimp gdk-pixbuf cairo gegl)))
|
| 888 | (arguments
|
| 889 | (substitute-keyword-arguments (package-arguments gmic-qt)
|
| 890 | ((#:configure-flags flags)
|
| 891 | '(list "-DGMIC_QT_HOST=gimp" "-DENABLE_DYNAMIC_LINKING=ON"
|
| 892 | (string-append "-DGMIC_LIB_PATH="
|
| 893 | (assoc-ref %build-inputs "gmic") "/lib")))))
|
| 894 | (synopsis "GIMP plugin for the G'MIC image processing framework")))
|
| 895 |
|
| 896 | (define-public nip2
|
| 897 | (package
|
| 898 | (name "nip2")
|
| 899 | (version "8.7.1")
|
| 900 | (source
|
| 901 | (origin
|
| 902 | (method url-fetch)
|
| 903 | (uri (string-append "https://github.com/libvips/nip2/releases/download/v"
|
| 904 | version "/nip2-" version ".tar.gz" ))
|
| 905 | (sha256
|
| 906 | (base32 "0l7n427njif53npqn02gfjjly8y3khbrkzqxp10j5vp9h97psgiw"))))
|
| 907 | (build-system gnu-build-system)
|
| 908 | (arguments
|
| 909 | `(#:phases
|
| 910 | (modify-phases %standard-phases
|
| 911 | |
| 912 | (add-after 'unpack 'disable-test-conv
|
| 913 | (lambda _
|
| 914 | (delete-file "test/workspaces/test_conv.ws")
|
| 915 | #t))
|
| 916 | (add-before 'check 'set-home
|
| 917 | (lambda _
|
| 918 | (setenv "HOME" "/tmp") #t)))))
|
| 919 | (inputs
|
| 920 | (list vips
|
| 921 | glib
|
| 922 | libtiff
|
| 923 | gtk+-2
|
| 924 | libxml2
|
| 925 | libexif
|
| 926 | libjpeg-turbo |
| 927 | (librsvg-for-system)
|
| 928 | fftw
|
| 929 | libgsf
|
| 930 | imagemagick
|
| 931 | orc
|
| 932 | matio
|
| 933 | lcms
|
| 934 | libwebp
|
| 935 | openexr-2
|
| 936 | poppler
|
| 937 | gsl))
|
| 938 | (native-inputs
|
| 939 | (list flex bison pkg-config))
|
| 940 | (home-page "https://github.com/libvips/nip2")
|
| 941 | (synopsis "Spreadsheet-like GUI for libvips")
|
| 942 | (description "This package provide a graphical user interface (GUI) for
|
| 943 | the VIPS image processing library. It's a little like a spreadsheet: you
|
| 944 | create a set of formula connecting your objects together, and on a change nip2
|
| 945 | recalculates.")
|
| 946 | (license license:gpl2+)))
|
| 947 |
|
| 948 | (define-public paraview
|
| 949 | (package
|
| 950 | (name "paraview")
|
| 951 | (version "5.11.1")
|
| 952 | (source
|
| 953 | (origin
|
| 954 | (method git-fetch)
|
| 955 | (uri (git-reference
|
| 956 | (url "https://gitlab.kitware.com/paraview/paraview.git")
|
| 957 | (commit (string-append "v" version))
|
| 958 | (recursive? #t)))
|
| 959 | (file-name (git-file-name name version))
|
| 960 | (sha256
|
| 961 | (base32 "0m1lgkl95f0pyhxp97gq2rf8hibv39v4c49imfj1va40z0flvard"))
|
| 962 | (modules '((guix build utils)))
|
| 963 | (snippet
|
| 964 | |
| 965 | #~(begin
|
| 966 | |
| 967 | |
| 968 | (for-each (lambda (dir)
|
| 969 | (delete-file-recursively
|
| 970 | (string-append "ThirdParty/" dir "/vtk"
|
| 971 | (string-downcase dir))))
|
| 972 | '( |
| 973 | |
| 974 | "NvPipe" |
| 975 | |
| 976 | |
| 977 | |
| 978 | "protobuf"))
|
| 979 | |
| 980 | (delete-file-recursively "Plugins/pvNVIDIAIndeX")
|
| 981 | |
| 982 | (for-each (lambda (dir)
|
| 983 | (delete-file-recursively
|
| 984 | (string-append "VTK/ThirdParty/" dir "/vtk" dir)))
|
| 985 | '( |
| 986 | "cli11"
|
| 987 | |
| 988 | "doubleconversion"
|
| 989 | "eigen"
|
| 990 | |
| 991 | "expat"
|
| 992 | |
| 993 | |
| 994 | "fmt"
|
| 995 | "freetype"
|
| 996 | "gl2ps"
|
| 997 | "glew"
|
| 998 | |
| 999 | "hdf5"
|
| 1000 | |
| 1001 | "jpeg"
|
| 1002 | "jsoncpp"
|
| 1003 | |
| 1004 | |
| 1005 | "libproj"
|
| 1006 | "libxml2"
|
| 1007 | |
| 1008 | "lz4"
|
| 1009 | "lzma"
|
| 1010 | "mpi4py"
|
| 1011 | "netcdf"
|
| 1012 | "nlohmannjson"
|
| 1013 | "ogg"
|
| 1014 | |
| 1015 | "png"
|
| 1016 | "pugixml"
|
| 1017 | "sqlite"
|
| 1018 | "theora"
|
| 1019 | "tiff"
|
| 1020 | "utf8"
|
| 1021 | |
| 1022 | |
| 1023 | |
| 1024 | |
| 1025 | |
| 1026 | |
| 1027 | "zlib"))))))
|
| 1028 | (build-system qt-build-system)
|
| 1029 | (arguments
|
| 1030 | (list
|
| 1031 | #:build-type "Release" |
| 1032 | #:tests? #f |
| 1033 | #:configure-flags
|
| 1034 | #~(let ((doc (string-append #$output "/share/doc/" #$name "-" #$version)))
|
| 1035 | (list
|
| 1036 | (string-append "-DCMAKE_INSTALL_DOCDIR=" doc) |
| 1037 |
|
| 1038 | |
| 1039 | "-DPARAVIEW_BUILD_DEVELOPER_DOCUMENTATION=ON"
|
| 1040 | (string-append "-DPARAVIEW_GENERATED_DOCUMENTATION_OUTPUT_DIRECTORY=" doc)
|
| 1041 |
|
| 1042 | |
| 1043 | |
| 1044 | "-DPARAVIEW_USE_MPI=ON"
|
| 1045 | "-DPARAVIEW_USE_PYTHON=ON"
|
| 1046 | "-DPARAVIEW_USE_QTWEBENGINE=ON"
|
| 1047 |
|
| 1048 | |
| 1049 | |
| 1050 | |
| 1051 | |
| 1052 | |
| 1053 | |
| 1054 | |
| 1055 | |
| 1056 | "-DPARAVIEW_ENABLE_FFMPEG=ON"
|
| 1057 | |
| 1058 | "-DPARAVIEW_ENABLE_GDAL=ON"
|
| 1059 | |
| 1060 | |
| 1061 | |
| 1062 | "-DPARAVIEW_ENABLE_MOTIONFX=ON"
|
| 1063 | |
| 1064 | |
| 1065 | |
| 1066 | |
| 1067 | "-DPARAVIEW_ENABLE_VISITBRIDGE=ON"
|
| 1068 | "-DPARAVIEW_ENABLE_XDMF3=ON"
|
| 1069 |
|
| 1070 | |
| 1071 | |
| 1072 | |
| 1073 | |
| 1074 | "-DPARAVIEW_VERSIONED_INSTALL=OFF"
|
| 1075 | "-DPARAVIEW_DATA_EXCLUDE_FROM_ALL=OFF"
|
| 1076 |
|
| 1077 | |
| 1078 | |
| 1079 | |
| 1080 | |
| 1081 | |
| 1082 | |
| 1083 | |
| 1084 | "-DPARAVIEW_PLUGIN_ENABLE_CAVEInteraction=ON"
|
| 1085 | |
| 1086 | "-DPARAVIEW_PLUGIN_ENABLE_GeographicalMap=ON"
|
| 1087 | "-DPARAVIEW_PLUGIN_ENABLE_GmshIO=ON"
|
| 1088 | "-DPARAVIEW_PLUGIN_ENABLE_InSituExodus=ON"
|
| 1089 | |
| 1090 | "-DPARAVIEW_PLUGIN_ENABLE_NetCDFTimeAnnotationPlugin=ON"
|
| 1091 | |
| 1092 | |
| 1093 | "-DPARAVIEW_PLUGIN_ENABLE_SpaceMouseInteractor=ON"
|
| 1094 | |
| 1095 | |
| 1096 | |
| 1097 |
|
| 1098 | |
| 1099 | "-DVTK_SMP_IMPLEMENTATION_TYPE=TBB"
|
| 1100 | "-DVTKm_ENABLE_MPI=ON"
|
| 1101 |
|
| 1102 | |
| 1103 | "-DVTK_MODULE_USE_EXTERNAL_ParaView_protobuf=ON"
|
| 1104 | "-DVTK_MODULE_USE_EXTERNAL_VTK_cli11=ON"
|
| 1105 | "-DVTK_MODULE_USE_EXTERNAL_VTK_doubleconversion=ON"
|
| 1106 | "-DVTK_MODULE_USE_EXTERNAL_VTK_eigen=ON"
|
| 1107 | "-DVTK_MODULE_USE_EXTERNAL_VTK_expat=ON"
|
| 1108 | "-DVTK_MODULE_USE_EXTERNAL_VTK_fmt=ON"
|
| 1109 | "-DVTK_MODULE_USE_EXTERNAL_VTK_freetype=ON"
|
| 1110 | "-DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=ON"
|
| 1111 | "-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON"
|
| 1112 | "-DVTK_MODULE_USE_EXTERNAL_VTK_hdf5=ON"
|
| 1113 | "-DVTK_MODULE_USE_EXTERNAL_VTK_jpeg=ON"
|
| 1114 | "-DVTK_MODULE_USE_EXTERNAL_VTK_jsoncpp=ON"
|
| 1115 | "-DVTK_MODULE_USE_EXTERNAL_VTK_libproj=ON"
|
| 1116 | "-DVTK_MODULE_USE_EXTERNAL_VTK_libxml2=ON"
|
| 1117 | "-DVTK_MODULE_USE_EXTERNAL_VTK_lz4=ON"
|
| 1118 | "-DVTK_MODULE_USE_EXTERNAL_VTK_lzma=ON"
|
| 1119 | "-DVTK_MODULE_USE_EXTERNAL_VTK_mpi4py=ON"
|
| 1120 | "-DVTK_MODULE_USE_EXTERNAL_VTK_netcdf=ON"
|
| 1121 | "-DVTK_MODULE_USE_EXTERNAL_VTK_nlohmannjson=ON"
|
| 1122 | "-DVTK_MODULE_USE_EXTERNAL_VTK_ogg=ON"
|
| 1123 | |
| 1124 | "-DVTK_MODULE_USE_EXTERNAL_VTK_png=ON"
|
| 1125 | "-DVTK_MODULE_USE_EXTERNAL_VTK_pugixml=ON"
|
| 1126 | "-DVTK_MODULE_USE_EXTERNAL_VTK_sqlite=ON"
|
| 1127 | "-DVTK_MODULE_USE_EXTERNAL_VTK_theora=ON"
|
| 1128 | "-DVTK_MODULE_USE_EXTERNAL_VTK_tiff=ON"
|
| 1129 | "-DVTK_MODULE_USE_EXTERNAL_VTK_utf8=ON"
|
| 1130 | "-DVTK_MODULE_USE_EXTERNAL_VTK_zlib=ON"))
|
| 1131 | #:phases
|
| 1132 | #~(modify-phases %standard-phases
|
| 1133 | (add-after 'set-paths 'hide-gfortran
|
| 1134 | (lambda _
|
| 1135 | (setenv "CPLUS_INCLUDE_PATH"
|
| 1136 | (string-join
|
| 1137 | (delete (string-append #$(this-package-native-input "gfortran")
|
| 1138 | "/include/c++")
|
| 1139 | (string-split (getenv "CPLUS_INCLUDE_PATH") #\:))
|
| 1140 | ":"))))
|
| 1141 | (replace 'install-license-files
|
| 1142 | (lambda _
|
| 1143 | (let ((src (string-append #$output "/share/licenses/ParaView"))
|
| 1144 | (dst (string-append #$output "/share/doc/"
|
| 1145 | #$name "-" #$version "/licenses")))
|
| 1146 | (copy-recursively src dst)
|
| 1147 | (delete-file-recursively (dirname src))))))))
|
| 1148 | (native-inputs
|
| 1149 | (list gfortran
|
| 1150 | |
| 1151 | doxygen
|
| 1152 | graphviz
|
| 1153 | perl
|
| 1154 | python-sphinx))
|
| 1155 | (inputs
|
| 1156 | (list boost
|
| 1157 | cli11
|
| 1158 | curl
|
| 1159 | double-conversion
|
| 1160 | eigen
|
| 1161 | expat
|
| 1162 | ffmpeg
|
| 1163 | fmt
|
| 1164 | freetype
|
| 1165 | gdal
|
| 1166 | gl2ps
|
| 1167 | glew
|
| 1168 | gmsh
|
| 1169 | hdf5
|
| 1170 | nlohmann-json |
| 1171 | jsoncpp
|
| 1172 | libjpeg-turbo
|
| 1173 | libogg
|
| 1174 | libpng
|
| 1175 | libtheora
|
| 1176 | libtiff
|
| 1177 | libxcursor
|
| 1178 | libxml2
|
| 1179 | libxt
|
| 1180 | lz4
|
| 1181 | lzip
|
| 1182 | mesa
|
| 1183 | netcdf
|
| 1184 | openmpi
|
| 1185 | |
| 1186 | |
| 1187 | |
| 1188 | proj
|
| 1189 | protobuf
|
| 1190 | pugixml
|
| 1191 | python-cftime
|
| 1192 | python-matplotlib
|
| 1193 | python-mpi4py
|
| 1194 | python-numpy
|
| 1195 | python-wrapper
|
| 1196 | qtbase-5
|
| 1197 | qtdeclarative-5
|
| 1198 | qtmultimedia-5
|
| 1199 | qtsvg-5
|
| 1200 | qttools-5
|
| 1201 | qtwebchannel-5
|
| 1202 | qtwebengine-5
|
| 1203 | qtx11extras
|
| 1204 | qtxmlpatterns
|
| 1205 | sdl2
|
| 1206 | sqlite
|
| 1207 | tbb
|
| 1208 | utfcpp
|
| 1209 | zlib))
|
| 1210 | (home-page "https://www.paraview.org/")
|
| 1211 | (synopsis "VTK-based, parallel data analyzer and visualizer")
|
| 1212 | (description "ParaView is a VTK-based, parallel data analyzer and
|
| 1213 | visualizer which allows exploring data interactively in 3D or
|
| 1214 | programmatically.")
|
| 1215 | (license license:bsd-3)))
|
| 1216 |
|
| 1217 | (define-public vxl
|
| 1218 | (package
|
| 1219 | (name "vxl")
|
| 1220 | (version "2.0.2")
|
| 1221 | (source
|
| 1222 | (origin
|
| 1223 | (method git-fetch)
|
| 1224 | (uri (git-reference
|
| 1225 | (url "https://github.com/vxl/vxl")
|
| 1226 | (commit (string-append "v" version))))
|
| 1227 | (file-name (git-file-name name version))
|
| 1228 | (sha256
|
| 1229 | (base32 "0949hw57szq8943f1whwqaz591xjmb19kj803hcv74hdai2b0ycg"))
|
| 1230 | (modules '((guix build utils)))
|
| 1231 | |
| 1232 | |
| 1233 | (snippet
|
| 1234 | '(begin
|
| 1235 | (for-each delete-file-recursively
|
| 1236 | '("v3p/bzlib/"
|
| 1237 | "v3p/geotiff/"
|
| 1238 | "v3p/jpeg/"
|
| 1239 | "v3p/png/"
|
| 1240 | "v3p/tiff/"
|
| 1241 | "v3p/zlib/"))
|
| 1242 | (substitute* "v3p/CMakeLists.txt"
|
| 1243 | (("add_subdirectory\\((tiff|png|jpeg|zlib|bzlib|geotiff)\\)")
|
| 1244 | ""))
|
| 1245 | #t))))
|
| 1246 | (build-system cmake-build-system)
|
| 1247 | (inputs
|
| 1248 | (list libgeotiff libtiff libjpeg-turbo libpng zlib))
|
| 1249 | (home-page "https://github.com/vxl/vxl/")
|
| 1250 | (synopsis "Collection of C++ libraries for computer vision")
|
| 1251 | (description "VXL (the Vision-something-Libraries) is a collection of C++
|
| 1252 | libraries designed for computer vision research and implementation.")
|
| 1253 | (license license:bsd-3)))
|
| 1254 |
|
| 1255 | (define-public vxl-1
|
| 1256 | (package (inherit vxl)
|
| 1257 | (name "vxl")
|
| 1258 | (version "1.18.0")
|
| 1259 | (source
|
| 1260 | (origin
|
| 1261 | (method git-fetch)
|
| 1262 | (uri (git-reference
|
| 1263 | (url "https://github.com/vxl/vxl")
|
| 1264 | (commit (string-append "v" version))))
|
| 1265 | (file-name (git-file-name name version))
|
| 1266 | (sha256
|
| 1267 | (base32 "1g4mr2cc58jwm0vasscbd4y5380wj3ahkvq121z4gs83fhavvxgz"))
|
| 1268 | (modules '((guix build utils)))
|
| 1269 | (snippet
|
| 1270 | '(begin
|
| 1271 | (for-each delete-file-recursively
|
| 1272 | '("v3p/bzlib/"
|
| 1273 | "v3p/geotiff/"
|
| 1274 | "v3p/png/"
|
| 1275 | "v3p/tiff/"
|
| 1276 | "v3p/zlib/"))
|
| 1277 | (substitute* "v3p/CMakeLists.txt"
|
| 1278 | (("add_subdirectory\\((tiff|png|jpeg|zlib|bzlib|geotiff)\\)")
|
| 1279 | ""))
|
| 1280 | #t))))
|
| 1281 | (arguments
|
| 1282 | `(#:configure-flags
|
| 1283 | |
| 1284 | (list "-DVNL_CONFIG_LEGACY_METHODS=ON")))))
|
| 1285 |
|
| 1286 | (define-public insight-toolkit
|
| 1287 | (package
|
| 1288 | (name "insight-toolkit")
|
| 1289 | (version "5.0.0")
|
| 1290 | (source
|
| 1291 | (origin
|
| 1292 | (method url-fetch)
|
| 1293 | (uri (string-append "https://github.com/InsightSoftwareConsortium/ITK/"
|
| 1294 | "releases/download/v" version "/InsightToolkit-"
|
| 1295 | version ".tar.xz"))
|
| 1296 | (sha256
|
| 1297 | (base32 "0bs63mk4q8jmx38f031jy5w5n9yy5ng9x8ijwinvjyvas8cichqi"))))
|
| 1298 | (build-system cmake-build-system)
|
| 1299 | (arguments
|
| 1300 | (list #:tests? #f |
| 1301 | #:configure-flags #~'("-DITK_USE_GPU=ON"
|
| 1302 | "-DITK_USE_SYSTEM_LIBRARIES=ON"
|
| 1303 | "-DITK_USE_SYSTEM_GOOGLETEST=ON"
|
| 1304 | "-DITK_BUILD_SHARED=ON"
|
| 1305 | |
| 1306 | |
| 1307 | |
| 1308 | "-DGTEST_ROOT=gtest"
|
| 1309 | "-DCMAKE_CXX_STANDARD=17")
|
| 1310 |
|
| 1311 | #:phases #~(modify-phases %standard-phases
|
| 1312 | (add-after 'unpack 'do-not-tune
|
| 1313 | (lambda _
|
| 1314 | (substitute* "CMake/ITKSetStandardCompilerFlags.cmake"
|
| 1315 | (("-mtune=native")
|
| 1316 | "")))))))
|
| 1317 | (inputs
|
| 1318 | (list eigen
|
| 1319 | expat
|
| 1320 | fftw
|
| 1321 | fftwf
|
| 1322 | hdf5
|
| 1323 | libjpeg-turbo
|
| 1324 | libpng
|
| 1325 | libtiff
|
| 1326 | mesa-opencl
|
| 1327 | perl
|
| 1328 | python
|
| 1329 | tbb
|
| 1330 | vxl-1
|
| 1331 | zlib))
|
| 1332 | (native-inputs
|
| 1333 | (list googletest pkg-config))
|
| 1334 |
|
| 1335 | |
| 1336 | |
| 1337 | |
| 1338 | (properties '((tunable? . #t)))
|
| 1339 |
|
| 1340 | (home-page "https://github.com/InsightSoftwareConsortium/ITK/")
|
| 1341 | (synopsis "Scientific image processing, segmentation and registration")
|
| 1342 | (description "The Insight Toolkit (ITK) is a toolkit for N-dimensional
|
| 1343 | scientific image processing, segmentation, and registration. Segmentation is
|
| 1344 | the process of identifying and classifying data found in a digitally sampled
|
| 1345 | representation. Typically the sampled representation is an image acquired
|
| 1346 | from such medical instrumentation as CT or MRI scanners. Registration is the
|
| 1347 | task of aligning or developing correspondences between data. For example, in
|
| 1348 | the medical environment, a CT scan may be aligned with a MRI scan in order to
|
| 1349 | combine the information contained in both.")
|
| 1350 | (license license:asl2.0)))
|
| 1351 |
|
| 1352 | (define-public insight-toolkit-4
|
| 1353 | (package (inherit insight-toolkit)
|
| 1354 | (version "4.13.2")
|
| 1355 | (source
|
| 1356 | (origin
|
| 1357 | (method url-fetch)
|
| 1358 | (uri (string-append "https://github.com/InsightSoftwareConsortium/ITK/"
|
| 1359 | "releases/download/v" version "/InsightToolkit-"
|
| 1360 | version ".tar.xz"))
|
| 1361 | (sha256
|
| 1362 | (base32 "19cgfpd63gqrvc3m27m394gy2d7w79g5y6lvznb5qqr49lihbgns"))))
|
| 1363 | (arguments
|
| 1364 | (list #:tests? #f |
| 1365 | #:configure-flags #~'("-DITKV3_COMPATIBILITY=ON" |
| 1366 | "-DITK_USE_GPU=ON"
|
| 1367 | "-DITK_USE_SYSTEM_LIBRARIES=ON"
|
| 1368 | "-DITK_USE_SYSTEM_GOOGLETEST=ON"
|
| 1369 | "-DITK_USE_SYSTEM_VXL=ON")))))
|
| 1370 |
|
| 1371 | (define-public insight-toolkit-4.12
|
| 1372 | (package (inherit insight-toolkit-4)
|
| 1373 | (version "4.12.2")
|
| 1374 | (source
|
| 1375 | (origin
|
| 1376 | (method url-fetch)
|
| 1377 | (uri (string-append "mirror://sourceforge/itk/itk/4.12/"
|
| 1378 | "InsightToolkit-" version ".tar.xz"))
|
| 1379 | (sha256
|
| 1380 | (base32 "1qw9mxbh083siljygahl4gdfv91xvfd8hfl7ghwii19f60xrvn2w"))))))
|
| 1381 |
|
| 1382 | (define-public itk-snap
|
| 1383 | (package
|
| 1384 | (name "itk-snap")
|
| 1385 | (version "3.8.0")
|
| 1386 | (source
|
| 1387 | (origin
|
| 1388 | (method git-fetch)
|
| 1389 | (uri (git-reference
|
| 1390 | (url "https://git.code.sf.net/p/itk-snap/src")
|
| 1391 | (commit (string-append "v" version))))
|
| 1392 | (file-name (git-file-name name version))
|
| 1393 | (sha256
|
| 1394 | (base32 "15i5ixpryfrbf3vrrb5rici8fb585f25k0v1ljds16bp1f1msr4q"))
|
| 1395 | (patches (search-patches "itk-snap-alt-glibc-compat.patch"))))
|
| 1396 | (build-system cmake-build-system)
|
| 1397 | (arguments
|
| 1398 | `(#:configure-flags
|
| 1399 | (list "-DSNAP_VERSION_GIT_SHA1=release"
|
| 1400 | "-DSNAP_VERSION_GIT_BRANCH=release"
|
| 1401 | "-DSNAP_VERSION_GIT_TIMESTAMP=0"
|
| 1402 | "-DSNAP_PACKAGE_QT_PLUGINS=OFF"
|
| 1403 | "-DCMAKE_POSITION_INDEPENDENT_CODE=ON")
|
| 1404 | #:phases
|
| 1405 | (modify-phases %standard-phases
|
| 1406 | |
| 1407 | |
| 1408 | |
| 1409 | (add-after 'unpack 'do-not-copy-dependencies
|
| 1410 | (lambda _
|
| 1411 | (substitute* "CMakeLists.txt"
|
| 1412 | (("install_qt5_executable\
|
| 1413 | \\(\\$\\{SNAP_MAIN_INSTALL_DIR\\}/\\$\\{SNAP_EXE\\}\\)")
|
| 1414 | ""))))
|
| 1415 | (add-after 'unpack 'disable-gui-tests
|
| 1416 | (lambda _
|
| 1417 | |
| 1418 | (substitute* "CMakeLists.txt"
|
| 1419 | ((" (Workspace|DiffSpace|ProbeIntensity|RegionCompetition\
|
| 1420 | |RandomForest|RandomForestBailOut)")
|
| 1421 | ""))))
|
| 1422 | (add-after 'unpack 'make-reproducible
|
| 1423 | (lambda _
|
| 1424 | (substitute* "CMakeLists.txt"
|
| 1425 | (("TODAY\\(SNAP_VERSION_COMPILE_DATE\\)")
|
| 1426 | "SET(SNAP_VERSION_COMPILE_DATE \"(removed for reproducibility)\")"))))
|
| 1427 | (add-after 'unpack 'prepare-submodules
|
| 1428 | (lambda* (#:key inputs #:allow-other-keys)
|
| 1429 | (rmdir "Submodules/c3d")
|
| 1430 | (copy-recursively (assoc-ref inputs "c3d-src")
|
| 1431 | "Submodules/c3d")
|
| 1432 | (substitute* '("Submodules/c3d/adapters/BiasFieldCorrectionN4.cxx"
|
| 1433 | "Submodules/c3d/adapters/ApplyMetric.cxx")
|
| 1434 | (("vcl_") "std::"))
|
| 1435 | (rmdir "Submodules/greedy")
|
| 1436 | (symlink (assoc-ref inputs "greedy-src")
|
| 1437 | "Submodules/greedy")))
|
| 1438 | (add-after 'unpack 'fix-includes
|
| 1439 | (lambda _
|
| 1440 | (substitute* "GUI/Model/RegistrationModel.cxx"
|
| 1441 | (("<vnl_symmetric_eigensystem.h>")
|
| 1442 | "<vnl/algo/vnl_symmetric_eigensystem.h>"))))
|
| 1443 | (add-before 'check 'prepare-tests
|
| 1444 | (lambda _
|
| 1445 | |
| 1446 | (setenv "HOME" "/tmp")))
|
| 1447 | (add-after 'install 'wrap-executable
|
| 1448 | (lambda* (#:key inputs outputs #:allow-other-keys)
|
| 1449 | (let ((out (assoc-ref outputs "out")))
|
| 1450 | (wrap-program (string-append out "/bin/itksnap")
|
| 1451 | `("QT_PLUGIN_PATH" ":" prefix
|
| 1452 | ,(map (lambda (label)
|
| 1453 | (string-append (assoc-ref inputs label)
|
| 1454 | "/lib/qt5/plugins"))
|
| 1455 | '("qtbase" "qtdeclarative-5"))))))))))
|
| 1456 | (inputs
|
| 1457 | (list curl
|
| 1458 | fftw
|
| 1459 | fftwf
|
| 1460 | glu
|
| 1461 | hdf5
|
| 1462 | mesa-opencl
|
| 1463 | |
| 1464 | |
| 1465 | insight-toolkit-4.12
|
| 1466 | vtk-7
|
| 1467 | qtbase-5
|
| 1468 | qtdeclarative-5
|
| 1469 | vxl-1
|
| 1470 | zlib))
|
| 1471 | (native-inputs
|
| 1472 | `(("googletest" ,googletest)
|
| 1473 | ("qttools-5" ,qttools-5)
|
| 1474 | ("pkg-config" ,pkg-config)
|
| 1475 | ("c3d-src"
|
| 1476 | ,(let* ((commit "f521358db26e00002c911cc47bf463b043942ad3")
|
| 1477 | (revision "1")
|
| 1478 | (version (git-version "0" revision commit)))
|
| 1479 | (origin
|
| 1480 | (method git-fetch)
|
| 1481 | (uri (git-reference
|
| 1482 | (url "https://github.com/pyushkevich/c3d")
|
| 1483 | (commit commit)))
|
| 1484 | (file-name (git-file-name "c3d" version))
|
| 1485 | (sha256
|
| 1486 | (base32
|
| 1487 | "0kyv3rxrxwr8c3sa9zv01lsnhk95b27gx1s870k3yi8qp52h7bx3")))))
|
| 1488 | |
| 1489 | |
| 1490 | ("greedy-src"
|
| 1491 | ,(let* ((commit "97e340f7e8e66597599144947775e6039e79a0d3")
|
| 1492 | (revision "1")
|
| 1493 | (version (git-version "0" revision commit)))
|
| 1494 | (origin
|
| 1495 | (method git-fetch)
|
| 1496 | (uri (git-reference
|
| 1497 | (url "https://github.com/pyushkevich/greedy")
|
| 1498 | (commit commit)))
|
| 1499 | (file-name (git-file-name "greedy" version))
|
| 1500 | (sha256
|
| 1501 | (base32
|
| 1502 | "0k5bc9za4jrc8z9dj08z1rkcp5xf0gnd1d2jmi1w9ny4vxh2q2ab")))))))
|
| 1503 | (home-page "https://sourceforge.net/p/itk-snap/")
|
| 1504 | (synopsis "Medical image segmentation")
|
| 1505 | (description "ITK-SNAP is a tool for segmenting anatomical structures in
|
| 1506 | medical images. It provides an automatic active contour segmentation
|
| 1507 | pipeline, along with supporting a manual segmentation toolbox. ITK-SNAP has a
|
| 1508 | full-featured UI aimed at clinical researchers.")
|
| 1509 | |
| 1510 | (license license:gpl3+)))
|
| 1511 |
|
| 1512 | (define-public metapixel
|
| 1513 | |
| 1514 | (let ((commit "98ee9daa093b6c334941242e63f90b1c2876eb4f"))
|
| 1515 | (package
|
| 1516 | (name "metapixel")
|
| 1517 | (version (git-version "1.0.2" "1" commit))
|
| 1518 | (source
|
| 1519 | (origin
|
| 1520 | (method git-fetch)
|
| 1521 | (uri (git-reference
|
| 1522 | (url "https://github.com/schani/metapixel")
|
| 1523 | (commit commit)
|
| 1524 | |
| 1525 | (recursive? #t)))
|
| 1526 | (file-name (git-file-name name version))
|
| 1527 | (sha256
|
| 1528 | (base32 "0r7n3a6bvcxkbpda4mwmrpicii09iql5z69nkjqygkwxw7ny3309"))))
|
| 1529 | (build-system gnu-build-system)
|
| 1530 | (inputs
|
| 1531 | `(("giflib" ,giflib)
|
| 1532 | ("libjpeg" ,libjpeg-turbo)
|
| 1533 | ("libpng" ,libpng)
|
| 1534 | ("perl" ,perl)))
|
| 1535 | (native-inputs
|
| 1536 | `(("pkg-config" ,pkg-config)
|
| 1537 | ("docbook-xml" ,docbook-xml)
|
| 1538 | ("docbook-xsl" ,docbook-xsl)
|
| 1539 | ("xsltproc" ,libxslt)))
|
| 1540 | (arguments
|
| 1541 | `(#:tests? #f |
| 1542 | #:make-flags (list
|
| 1543 | (string-append "PREFIX=" (assoc-ref %outputs "out"))
|
| 1544 | (string-append "MANPAGE_XSL="
|
| 1545 | (assoc-ref %build-inputs "docbook-xsl")
|
| 1546 | "/xml/xsl/docbook-xsl-*/manpages/docbook.xsl"))
|
| 1547 | #:phases
|
| 1548 | (modify-phases %standard-phases
|
| 1549 | (delete 'configure)
|
| 1550 | (add-before 'install 'make-local-docbook-xml
|
| 1551 | (lambda* (#:key inputs #:allow-other-keys)
|
| 1552 | (substitute* "metapixel.xml"
|
| 1553 | (("http://www.oasis-open.org/docbook/xml/4.2/docbookx.dtd")
|
| 1554 | (string-append (assoc-ref inputs "docbook-xml")
|
| 1555 | "/xml/dtd/docbook/docbookx.dtd")))
|
| 1556 | #t))
|
| 1557 | (add-before 'install 'fix-directory-creation
|
| 1558 | (lambda* (#:key outputs #:allow-other-keys)
|
| 1559 | (mkdir-p (string-append (assoc-ref outputs "out") "/share/man/man1"))
|
| 1560 | #t)))))
|
| 1561 | (home-page "https://www.complang.tuwien.ac.at/schani/metapixel/")
|
| 1562 | (synopsis "Photomosaics generator")
|
| 1563 | (description "Metapixel is a program for generating photomosaics. It can
|
| 1564 | generate classical photomosaics, in which the source image is viewed as a
|
| 1565 | matrix of equally sized rectangles for each of which a matching image is
|
| 1566 | substituted, as well as collage-style photomosaics, in which rectangular parts
|
| 1567 | of the source image at arbitrary positions (i.e. not aligned to a matrix) are
|
| 1568 | substituted by matching images.")
|
| 1569 | (license license:gpl2))))
|
| 1570 |
|
| 1571 | (define-public scantailor-advanced
|
| 1572 | (let ((commit "3d1e74e6ace413733511086934a66f4e3f7a6027"))
|
| 1573 | (package
|
| 1574 | (name "scantailor-advanced")
|
| 1575 | (version (string-append "1.0.16-" (string-take commit 7)))
|
| 1576 | (source
|
| 1577 | (origin
|
| 1578 | (method git-fetch)
|
| 1579 | (uri (git-reference
|
| 1580 | (url "https://github.com/4lex4/scantailor-advanced")
|
| 1581 | (commit commit)))
|
| 1582 | (file-name (git-file-name name version))
|
| 1583 | (sha256
|
| 1584 | (base32
|
| 1585 | "0kixwjb2x457dq7927hkh34c803p7yh1pmn6n61rk9shqrcg492h"))))
|
| 1586 | (build-system qt-build-system)
|
| 1587 | (native-inputs
|
| 1588 | (list qttools-5))
|
| 1589 | (inputs
|
| 1590 | `(("boost" ,boost)
|
| 1591 | ("libjpeg" ,libjpeg-turbo)
|
| 1592 | ("libpng" ,libpng)
|
| 1593 | ("libtiff" ,libtiff)
|
| 1594 | ("qtbase" ,qtbase-5)
|
| 1595 | ("qtsvg-5" ,qtsvg-5)
|
| 1596 | ("zlib" ,zlib)))
|
| 1597 | (arguments
|
| 1598 | `(#:phases
|
| 1599 | (modify-phases %standard-phases
|
| 1600 | |
| 1601 | (add-after 'unpack 'disable-failing-tests
|
| 1602 | (lambda _
|
| 1603 | (setenv "ARGS" "--exclude-regex \"imageproc_.*\"")
|
| 1604 | #t)))))
|
| 1605 | (home-page "https://github.com/4lex4/scantailor-advanced")
|
| 1606 | (synopsis "Clean up scanned pages")
|
| 1607 | (description "Scan Tailor is an interactive post-processing tool for
|
| 1608 | scanned pages. It performs operations such as page splitting, deskewing,
|
| 1609 | adding/removing borders, and others. You give it raw scans, and you get pages
|
| 1610 | ready to be printed or assembled into a PDF or DJVU file. Scanning, optical
|
| 1611 | character recognition, and assembling multi-page documents are out of scope of
|
| 1612 | this project.
|
| 1613 |
|
| 1614 | Scan Tailer Advanced is a fork of Scan Tailer that merges Scan Tailor Featured
|
| 1615 | and Scan Tailor Enhanced versions as well as including many more bug fixes.")
|
| 1616 | (license license:gpl3+))))
|
| 1617 |
|
| 1618 | (define-public stiff
|
| 1619 | (package
|
| 1620 | (name "stiff")
|
| 1621 | (version "2.4.0")
|
| 1622 | (source
|
| 1623 | (origin
|
| 1624 | (method url-fetch)
|
| 1625 | (uri (string-append "https://www.astromatic.net/download/stiff/stiff-"
|
| 1626 | version ".tar.gz"))
|
| 1627 | (sha256
|
| 1628 | (base32 "14m92dskzw7bwsr64ha4p0mj3ndv13gwcbfic3qxrs3zq5353s7l"))))
|
| 1629 | (build-system gnu-build-system)
|
| 1630 | (inputs
|
| 1631 | (list libtiff zlib libjpeg-turbo))
|
| 1632 | (home-page "https://www.astromatic.net/software/stiff")
|
| 1633 | (synopsis "Convert scientific FITS images to TIFF format")
|
| 1634 | (description
|
| 1635 | "STIFF is a program that converts scientific @acronym{FITS, Flexible Image
|
| 1636 | Transport System} images to the more popular TIFF format for illustration
|
| 1637 | purposes.")
|
| 1638 | (license license:gpl3+)))
|
| 1639 |
|
| 1640 | (define-public python-imgviz
|
| 1641 | (package
|
| 1642 | (name "python-imgviz")
|
| 1643 | (version "1.2.6")
|
| 1644 | (source
|
| 1645 | (origin
|
| 1646 | |
| 1647 | (method git-fetch)
|
| 1648 | (uri (git-reference
|
| 1649 | (url "https://github.com/wkentaro/imgviz.git")
|
| 1650 | (commit (string-append "v" version))))
|
| 1651 | (file-name (git-file-name name version))
|
| 1652 | (sha256
|
| 1653 | (base32 "1bm0wdv5p26i8nl4kx3145cz553v401sgbpgc96sddzjfmfiydcw"))))
|
| 1654 | (build-system python-build-system)
|
| 1655 | (arguments
|
| 1656 | `(#:phases
|
| 1657 | (modify-phases %standard-phases
|
| 1658 | (replace 'check
|
| 1659 | (lambda* (#:key inputs outputs tests? #:allow-other-keys)
|
| 1660 | (when tests?
|
| 1661 | (add-installed-pythonpath inputs outputs)
|
| 1662 | (invoke "pytest" "-v" "tests"))
|
| 1663 | #t)))))
|
| 1664 | (propagated-inputs
|
| 1665 | (list python-matplotlib python-numpy python-pillow python-pyyaml))
|
| 1666 | (native-inputs (list python-pytest))
|
| 1667 | (home-page "http://github.com/wkentaro/imgviz")
|
| 1668 | (synopsis "Image Visualization Tools")
|
| 1669 | (description "Python library for object detection, semantic and instance
|
| 1670 | segmentation.")
|
| 1671 | (license license:expat)))
|
| 1672 |
|
| 1673 | (define-public labelme
|
| 1674 | (package
|
| 1675 | (name "labelme")
|
| 1676 | (version "4.5.13")
|
| 1677 | (source
|
| 1678 | (origin
|
| 1679 | |
| 1680 | (method git-fetch)
|
| 1681 | (uri (git-reference
|
| 1682 | (url "https://github.com/wkentaro/labelme.git")
|
| 1683 | (commit (string-append "v" version))))
|
| 1684 | (file-name (git-file-name name version))
|
| 1685 | (sha256
|
| 1686 | (base32 "0cmi2xb4dgh7738l259rgwhn9l134f0vnaaqc2gflc5yr3lqhrv2"))))
|
| 1687 | (build-system python-build-system)
|
| 1688 | (arguments
|
| 1689 | `(#:phases
|
| 1690 | (modify-phases %standard-phases
|
| 1691 | (add-after 'unpack 'loosen-requirements
|
| 1692 | (lambda _
|
| 1693 | |
| 1694 | (substitute* "setup.py"
|
| 1695 | (("matplotlib<3\\.3")
|
| 1696 | "matplotlib"))))
|
| 1697 | (add-before 'check 'start-xserver
|
| 1698 | (lambda* (#:key inputs #:allow-other-keys)
|
| 1699 | (let ((xorg-server (assoc-ref inputs "xorg-server")))
|
| 1700 | |
| 1701 | (system (string-append xorg-server "/bin/Xvfb :99 -screen 0 "
|
| 1702 | "1920x1200x24 -ac +extension GLX +render "
|
| 1703 | "-noreset &"))
|
| 1704 | (setenv "DISPLAY" ":99.0"))))
|
| 1705 | (replace 'check
|
| 1706 | (lambda* (#:key inputs outputs tests? #:allow-other-keys)
|
| 1707 | (when tests?
|
| 1708 | (add-installed-pythonpath inputs outputs)
|
| 1709 | |
| 1710 | (delete-file "tests/docs_tests/man_tests/test_labelme_1.py")
|
| 1711 | |
| 1712 | (delete-file "tests/labelme_tests/widgets_tests/test_label_dialog.py")
|
| 1713 | |
| 1714 | (delete-file "tests/labelme_tests/widgets_tests/test_label_list_widget.py")
|
| 1715 | (setenv "MPLBACKEND" "agg")
|
| 1716 | (invoke "pytest" "-v" "tests" "-m" "not gpu")))))))
|
| 1717 | (propagated-inputs
|
| 1718 | (list python-imgviz
|
| 1719 | python-matplotlib
|
| 1720 | python-numpy
|
| 1721 | python-pillow
|
| 1722 | python-pyyaml
|
| 1723 | python-qtpy
|
| 1724 | python-termcolor))
|
| 1725 | (native-inputs
|
| 1726 | (list python-pytest python-pytest-qt xorg-server-for-tests))
|
| 1727 | (home-page "https://github.com/wkentaro/labelme")
|
| 1728 | (synopsis
|
| 1729 | "Image Polygonal Annotation")
|
| 1730 | (description
|
| 1731 | "Image and video labeling tool supporting different shapes like
|
| 1732 | polygons, rectangles, circles, lines, points and VOC/COCO export.")
|
| 1733 | (license license:gpl3+)))
|
| 1734 |
|
| 1735 | (define-public charls
|
| 1736 | (package
|
| 1737 | (name "charls")
|
| 1738 | (version "2.3.4")
|
| 1739 | (source (origin
|
| 1740 | (method git-fetch)
|
| 1741 | (uri (git-reference
|
| 1742 | (url "https://github.com/team-charls/charls/")
|
| 1743 | (commit (string-append version))))
|
| 1744 | (file-name (git-file-name name version))
|
| 1745 | (sha256
|
| 1746 | (base32
|
| 1747 | "0g3f1rfimk30rqmi7ic4i5vfphyqbbpsyyhwqq1iss9wjwaz2vs5"))))
|
| 1748 | (build-system cmake-build-system)
|
| 1749 | (arguments
|
| 1750 | `(#:configure-flags '("-DCMAKE_BUILD_TYPE:STRING=Release"
|
| 1751 | "-DBUILD_SHARED_LIBS=On")))
|
| 1752 | (native-inputs (list git pkg-config))
|
| 1753 | (home-page "https://github.com/team-charls/charls")
|
| 1754 | (synopsis "Library for using JPEG-LS compliant images")
|
| 1755 | (description
|
| 1756 | "CharLS is a codec library that can be used to build applications that
|
| 1757 | can handle JPEG-LS compliant images. In the application you are writing you
|
| 1758 | can call the CharLS codec and pass it images (sometimes called raster bitmaps),
|
| 1759 | to have them encoded to JPEG-LS, or JPEG-LS streams, which CharLS will decode
|
| 1760 | to images.")
|
| 1761 | (license license:bsd-3)))
|
| 1762 |
|
| 1763 | (define-public libansilove
|
| 1764 | (package
|
| 1765 | (name "libansilove")
|
| 1766 | (version "1.4.1")
|
| 1767 | (source (origin
|
| 1768 | (method git-fetch)
|
| 1769 | (uri (git-reference
|
| 1770 | (url "https://github.com/ansilove/libansilove")
|
| 1771 | (commit (string-append version))))
|
| 1772 | (file-name (git-file-name name version))
|
| 1773 | (sha256
|
| 1774 | (base32
|
| 1775 | "169njlck4a2bmf1kmjas1w594hyda543ykdnwg7fwkviij39l9z6"))))
|
| 1776 | (build-system cmake-build-system)
|
| 1777 | (arguments
|
| 1778 | (list #:tests? #f)) |
| 1779 | (native-inputs
|
| 1780 | (list gd))
|
| 1781 | (home-page "https://www.ansilove.org/")
|
| 1782 | (synopsis "Library for converting ANSI, ASCII, and other formats to PNG")
|
| 1783 | (description
|
| 1784 | "libansilove is a library for converting artscene file types to PNG images,
|
| 1785 | including ANSI (.ANS) and many others. The library primarily serves to support
|
| 1786 | the ansilove tool.")
|
| 1787 | (license license:bsd-2)))
|
| 1788 |
|
| 1789 | (define-public ansilove
|
| 1790 | (package
|
| 1791 | (name "ansilove")
|
| 1792 | (version "4.2.0")
|
| 1793 | (source (origin
|
| 1794 | (method git-fetch)
|
| 1795 | (uri (git-reference
|
| 1796 | (url "https://github.com/ansilove/ansilove")
|
| 1797 | (commit (string-append version))))
|
| 1798 | (file-name (git-file-name name version))
|
| 1799 | (sha256
|
| 1800 | (base32
|
| 1801 | "1h9r759krjl8wi68yxs1d46qfrx6v89a8vmmv3aqym8vn9x430kh"))))
|
| 1802 | (build-system cmake-build-system)
|
| 1803 | (native-inputs
|
| 1804 | (list libansilove))
|
| 1805 | (home-page "https://www.ansilove.org/")
|
| 1806 | (synopsis "ANSI and ASCII art to PNG converter")
|
| 1807 | (description
|
| 1808 | "AnsiLove is an ANSI and ASCII art to PNG converter, allowing to convert
|
| 1809 | ANSI and artscene-related file formats into PNG images, supporting ANSI (.ANS),
|
| 1810 | PCBoard (.PCB), Binary (.BIN), Artworx (.ADF), iCE Draw (.IDF), Tundra (.TND)
|
| 1811 | and XBin (.XB) formats.")
|
| 1812 | (license license:bsd-2)))
|